PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058464.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 877aa MW: 97412 Da PI: 8.6549

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.3	3.5e-22	783	863	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ ev++Li++r e+++r++ k++++lWee+s+++ + g++rsp qCk+ w +l ++y++ik ek++ +++pyf++++ XP_028058464.1 783 KWKPGEVMKLINMRGELHSRFQVVKQRMALWEEISANLLADGINRSPGQCKSLWTSLVQKYEEIKGDEKSK-----KNWPYFEDMN 863 7******************************************************************95.....79****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence
MAAFSALSLC PYNFSCRPNP NKRRFLCSLA SPSSIGTRGP KVPRKKSGRL EGAGKSMEDS 60 VQRKMEQFYE GSDGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK 120 IIPDTTFIRK WSHKIEAVVI THGHEDHIGA LPWVIPALDS HTPIFASSFT MELIKKRLKD 180 FGIFLPSRLK IFKTRRRFSA GPFEIEPIRV THSIPDCCGL VLRCADGTML HTGDWKIDES 240 PLDGKGFDRE ALEELSKEGV TLMMSDSTNI LSPGRTLSET VVADALLRRI SAAKGRVITT 300 QFASNIHRLG SVKAAADLTG RKLVFVGMAL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA 360 PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDIILY SAKVIPGNEI RVMKMLNRIS 420 EIGSTIVMGK NEQLHTSGHG YRGELEEVLK IVKPQHFLPI HGELLFLREH ELLGKSTGIR 480 HTTVIKNGEM LGVSHLRNRR VLSNGFISLG KENLQLMYND GDKAFGTSTE LCIDERLRIA 540 SDGIIVVSME ILRPQDADGS VEKTLKGRIR ITTRCLWLDK GKLLDALHKA AHASLSSCPI 600 NCPLAHMERI VSEVLRKMVR KYSSKRPEVI AIAIENPAAV LSDELNARLS GKSHVGFGIS 660 ALRKVVDGHP KKRRTTDIQE EEGKTQQELE GHDIEDDRLL SEEATTSGSE SAEKFSLNSD 720 GSDDFWKSFI ASSPIEQSVK DSNGSVPQEE HREKLKIEET KVDDMVEIPK CQSKSSKPGK 780 RNKWKPGEVM KLINMRGELH SRFQVVKQRM ALWEEISANL LADGINRSPG QCKSLWTSLV 840 QKYEEIKGDE KSKKNWPYFE DMNKILSDLE ATAAATK

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence

MAAFSALSLC PYNFSCRPNP NKRRFLCSLA SPSSIGTRGP KVPRKKSGRL EGAGKSMEDS  60
VQRKMEQFYE GSDGPPLRVL PIGGLGEIGM NCMLVGNYDR YILIDAGVMF PDYDELGVQK  120
IIPDTTFIRK WSHKIEAVVI THGHEDHIGA LPWVIPALDS HTPIFASSFT MELIKKRLKD  180
FGIFLPSRLK IFKTRRRFSA GPFEIEPIRV THSIPDCCGL VLRCADGTML HTGDWKIDES  240
PLDGKGFDRE ALEELSKEGV TLMMSDSTNI LSPGRTLSET VVADALLRRI SAAKGRVITT  300
QFASNIHRLG SVKAAADLTG RKLVFVGMAL RTYLDAAWKD GKAPIDPSTL VKVEDIDAYA  360
PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDIILY SAKVIPGNEI RVMKMLNRIS  420
EIGSTIVMGK NEQLHTSGHG YRGELEEVLK IVKPQHFLPI HGELLFLREH ELLGKSTGIR  480
HTTVIKNGEM LGVSHLRNRR VLSNGFISLG KENLQLMYND GDKAFGTSTE LCIDERLRIA  540
SDGIIVVSME ILRPQDADGS VEKTLKGRIR ITTRCLWLDK GKLLDALHKA AHASLSSCPI  600
NCPLAHMERI VSEVLRKMVR KYSSKRPEVI AIAIENPAAV LSDELNARLS GKSHVGFGIS  660
ALRKVVDGHP KKRRTTDIQE EEGKTQQELE GHDIEDDRLL SEEATTSGSE SAEKFSLNSD  720
GSDDFWKSFI ASSPIEQSVK DSNGSVPQEE HREKLKIEET KVDDMVEIPK CQSKSSKPGK  780
RNKWKPGEVM KLINMRGELH SRFQVVKQRM ALWEEISANL LADGINRSPG QCKSLWTSLV  840
QKYEEIKGDE KSKKNWPYFE DMNKILSDLE ATAAATK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein