PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028058376.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 543aa MW: 59749.9 Da PI: 6.4177

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028058376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.5	1.9e-14	255	314	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_028058376.1 255 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 314 57*****************666664478446******99***********98 PP
2	AP2	50.1	7.1e-16	357	408	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_028058376.1 357 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 408 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MARETSNWLS FSLSPMEMLS SSSQSQMLQS TMKLVPFDAP STEDSHHYYF DNFYANGWEN 60 TKAECLYDDG ENQVKQGQSI ADSSIFRSFV DSQIQQNTVP KLEDFLGGES SSLIGYSDSQ 120 TETQEDSSSL THIYGQNGST AYFNDHHQDL KPIQAAVGVG GFQAFSANSG SEEVVDDSAF 180 VGRAQLTCVN FGGRHHQSIE SGGGNQLGFS QCPTVGAGAL SLGVNSHSSS EKAIVSVDSS 240 GTCKKITDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQV YLGGYDKEDK 300 AARAYDLAAL KYWGPTATTN FPVSSYTTEL DEMKHATKQE FIASLRRKSS GFSRGASIYR 360 GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGLN AVTNFEMNRY 420 DVEAIMKSAL PIGGAAKRLK LSLEAEQKPY VNHDQQPQCS NNSSTSINFS TIQPLPAIPC 480 GGILPFDTTA RYHHNLFNIH SDNDRGTCTS DNPPGSAAAS MVTPMTFLPP PPAEFFIWPH 540 QSY

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MARETSNWLS FSLSPMEMLS SSSQSQMLQS TMKLVPFDAP STEDSHHYYF DNFYANGWEN  60
TKAECLYDDG ENQVKQGQSI ADSSIFRSFV DSQIQQNTVP KLEDFLGGES SSLIGYSDSQ  120
TETQEDSSSL THIYGQNGST AYFNDHHQDL KPIQAAVGVG GFQAFSANSG SEEVVDDSAF  180
VGRAQLTCVN FGGRHHQSIE SGGGNQLGFS QCPTVGAGAL SLGVNSHSSS EKAIVSVDSS  240
GTCKKITDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQARKGRQV YLGGYDKEDK  300
AARAYDLAAL KYWGPTATTN FPVSSYTTEL DEMKHATKQE FIASLRRKSS GFSRGASIYR  360
GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGLN AVTNFEMNRY  420
DVEAIMKSAL PIGGAAKRLK LSLEAEQKPY VNHDQQPQCS NNSSTSINFS TIQPLPAIPC  480
GGILPFDTTA RYHHNLFNIH SDNDRGTCTS DNPPGSAAAS MVTPMTFLPP PPAEFFIWPH  540
QSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	1e-167	AP2 family protein