PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028058293.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 284aa    MW: 32507.4 Da    PI: 5.437
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028058293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.3e-1881134356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  XP_028058293.1  81 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 134
                     456899***********************************************9 PP
2HD-ZIP_I/II129.41.4e-4180170191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr+++a+k++n++L++++++L++e+
  XP_028058293.1  80 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFEAIKADNDALQAQNHKLQAEI 170
                     69**************************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MNCIEMAFFP ANFMLQNSHE DDHQPPTSLS PILPLCTSQD FHGVGSLLGK RSMTFSGIDM  60
CDQETNGDDD FSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR  120
QIAIWFQNRR ARWKTKQLEK DYEVLKRQFE AIKADNDALQ AQNHKLQAEI LSLRSREPTE  180
SINLNKETEG SCSNRSENSS DVKLDMSRTP AIEFDSPPLS THPTSRPLFP PSMRPSGVAQ  240
LFQNSSSRPE KIDHIVKEES FTNMFCGIDD QTAFWPWLEQ QHFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-120HD-ZIP family protein