PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028057750.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30258.1 Da    PI: 8.0484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028057750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-19123177256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Le+ F+++ +++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_028057750.1 123 RKKLRLTKEQSVILEDSFKEHTTLNPNQKQALAKQLNLRPRQVEVWFQNRRARTK 177
                     788899***********************************************98 PP
2HD-ZIP_I/II119.81.4e-38123211189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lk+ + +lk+en+rL+ke +eL++
  XP_028057750.1 123 RKKLRLTKEQSVILEDSFKEHTTLNPNQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCESLKNYCAKLKDENRRLQKELQELKA 211
                     69*************************************************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MVSEDICNTG LTLGSAPITT PENHLHSHHH HHQHNKKLLS LKFDHVLPCL TLGLSSEEQK  60
IKTSVKIDAC KVHGESTISL SAVSSYSNSS VKRERDEEVE VEKVSSKVSD DQDQDQEEEG  120
SARKKLRLTK EQSVILEDSF KEHTTLNPNQ KQALAKQLNL RPRQVEVWFQ NRRARTKLKQ  180
TEIDCESLKN YCAKLKDENR RLQKELQELK APNVAAPFYM QLPAATLTMC PSCERIGSTG  240
GSENSSKSLF SIGAKHHFYS PFTHPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-73HD-ZIP family protein