PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028057623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25642.3 Da PI: 6.314 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 31 | 74 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ Ed+ + +a +++ + +W+ Ia+ ++ g+++++++ ++ XP_028057623.1 31 SWTKFEDKVFEQALVMFPEEkaeRWEMIAEQIP-GKSPEEVRAHY 74 7*****************99*************.**********9 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 131 | 175 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + k +G+g+W++I+r + +Rt+ q+ s+ qky XP_028057623.1 131 PWTEEEHRLFLLGLKTYGKGDWRSISRNVVVTRTPTQVASHAQKY 175 8*******************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MMFGDHHNYS SSDTNRWSMI GNSSATQSSS SWTKFEDKVF EQALVMFPEE KAERWEMIAE 60 QIPGKSPEEV RAHYEALVHD VFEIDSGRVE LPSYSDDWWD EPESTPSQIS FGSSAAAKTK 120 HGEADRKKGT PWTEEEHRLF LLGLKTYGKG DWRSISRNVV VTRTPTQVAS HAQKYYLRQN 180 SAKKERKRSS IHDITTTVDT NSIPPPPQFP NQGASTGYQS FNYPM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G04760.1 | 4e-78 | MYB family protein |