PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028057496.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 406aa MW: 44462.9 Da PI: 8.8726

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028057496.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028057496.1 90 FVCEICKKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	13.1	0.00029	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_028057496.1 167 WKCEKCSKKYAVQSDWKAHSKTC 189 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MMMKGLPIQR QNSGVEENMS HLTSTSAEFS ASSANIPETP TIYPHQYAAP PPSTQTQPLV 60 KKKRNLPGNP DPDAEVIALS PKTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RESKEIIRKK VYVCPETSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS 180 DWKAHSKTCG AREYRCDCGT IFSRRDSFIT HRAFCDALTK ETARGITSTP FLSSSELPTS 240 PSPTSQSHIN NNNNHNLLQP QLHSHDLHSF PWLDQDQELA RILHDDENPS PNPNLGPTFL 300 LQPYHQTLSS SSSPSPHISA TALLQKAAQI GATMSATTTT TTNACSPSPF GNLSPAATAG 360 APPSSLFQEM MASLSSASGF VGYKGDSGSG GGGDNEGTTR DFLGWA

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MMMKGLPIQR QNSGVEENMS HLTSTSAEFS ASSANIPETP TIYPHQYAAP PPSTQTQPLV  60
KKKRNLPGNP DPDAEVIALS PKTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RESKEIIRKK VYVCPETSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS  180
DWKAHSKTCG AREYRCDCGT IFSRRDSFIT HRAFCDALTK ETARGITSTP FLSSSELPTS  240
PSPTSQSHIN NNNNHNLLQP QLHSHDLHSF PWLDQDQELA RILHDDENPS PNPNLGPTFL  300
LQPYHQTLSS SSSPSPHISA TALLQKAAQI GATMSATTTT TTNACSPSPF GNLSPAATAG  360
APPSSLFQEM MASLSSASGF VGYKGDSGSG GGGDNEGTTR DFLGWA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	130	KLKQRESKEIIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-100	C2H2 family protein