PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056674.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 422aa MW: 47784.4 Da PI: 6.4594

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.6	4.6e-25	107	188	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr+++ ++++k++k+lWe++s+kmr++gf rs+++C++kw+nl k++kk k+ +k +s ++ y+++le XP_028056674.1 107 WVQEETRSLISFRRDVDGFFNTSKSNKHLWEQISAKMRDKGFDRSATMCTDKWRNLLKEFKKAKHLDKTS---ASAKMLYYKELE 188 ****************************************************************9974...5567999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MNEFSPLLIS SGRDRIPTPQ SLPETPQFIP SSPLVNPNSL EASSDSLLQR RRDRDMVIEV 60 SSNGDLQPHH QHHNHHHHHQ QQQQMILGDS SGEDLEVKAP KKRAETWVQE ETRSLISFRR 120 DVDGFFNTSK SNKHLWEQIS AKMRDKGFDR SATMCTDKWR NLLKEFKKAK HLDKTSASAK 180 MLYYKELEDL LRDRGKNGLY KGPSSSKIDS FIQFSDKGLE DGNIPFGSVE ASGRSTVNLE 240 RSLDHDGDPL AITTADAVAA SGVPPWNWRE TPGNGGEGNS AYGGRVIAVK WGEYTRRIGI 300 DGTADAIKEA IKSAFRLRTK RAFWLEDEDN VIRSLDRDMP LGNYTLHLDE GILIKVCLYD 360 ESNSMAVRAE DKTLYTEDEF RDFLSRNGFI GLREINGYRT FDNLDDLRPG AMYQGVRLLL 420 GD

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MNEFSPLLIS SGRDRIPTPQ SLPETPQFIP SSPLVNPNSL EASSDSLLQR RRDRDMVIEV  60
SSNGDLQPHH QHHNHHHHHQ QQQQMILGDS SGEDLEVKAP KKRAETWVQE ETRSLISFRR  120
DVDGFFNTSK SNKHLWEQIS AKMRDKGFDR SATMCTDKWR NLLKEFKKAK HLDKTSASAK  180
MLYYKELEDL LRDRGKNGLY KGPSSSKIDS FIQFSDKGLE DGNIPFGSVE ASGRSTVNLE  240
RSLDHDGDPL AITTADAVAA SGVPPWNWRE TPGNGGEGNS AYGGRVIAVK WGEYTRRIGI  300
DGTADAIKEA IKSAFRLRTK RAFWLEDEDN VIRSLDRDMP LGNYTLHLDE GILIKVCLYD  360
ESNSMAVRAE DKTLYTEDEF RDFLSRNGFI GLREINGYRT FDNLDDLRPG AMYQGVRLLL  420
GD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-164	Trihelix family protein