PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056558.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 861aa MW: 94500.1 Da PI: 6.7756

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056558.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	40	98	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_028056558.1 40 KYVRYTPEQVEALERVYHECPKPSSLRRQQLIRECpilsNIDPKQIKVWFQNRRCREKQ 98 5679*****************************************************97 PP
2	START	182.1	3.1e-57	184	392	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++++ve+l d++ W ++++++++l+v+s+g g+++l XP_028056558.1 184 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPTRVVEILKDRP-SWYHDCRAVDVLNVLSTGnsGTIELL 277 789*****************************************************9998888888.********************** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++ +a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRa++lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+ XP_028056558.1 278 YMQVYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQHFVRAGMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 372 ***************************************9988899***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s++ +++t++a+l+++++ XP_028056558.1 373 ESSTLLAQRTTMAALRQLRQ 392 **************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 861 aa Download sequence
MLRGRRDKKR KVGNLSVQKS VMMGVTSACK ESKMGMDNGK YVRYTPEQVE ALERVYHECP 60 KPSSLRRQQL IRECPILSNI DPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM 120 EENDRLQKQV SQLVYENSYF RQQTQNANLA TTDTSCESVV TSGQQHLTPQ HPPRDASPAG 180 LLSIAEETLT EFLSKATGTA VEWVQMPGMK PGPDSIGIIA ISHGCTGVAA RACGLVGLEP 240 TRVVEILKDR PSWYHDCRAV DVLNVLSTGN SGTIELLYMQ VYAPTTLAPA RDFWLLRYTS 300 VLEDGSLVVC ERSLNNTQNG PSMPPVQHFV RAGMLPSGYL IRPCEGGGSI IHIVDHMDLE 360 PWSVPEVLRP LYESSTLLAQ RTTMAALRQL RQISQEVSQP TVTGWGRRPA ALRALSQRLS 420 KGFNEAVNGF TDEGWSIIEN DGIDDVTLLV NSSPGKVMGA NPSYANGFPS MSNAVLCAKA 480 SMLLQNVPPA ILLRFLREHR SEWADSGIDA YSAASVKAGP CNLAGPQAGS FGGQVILPLS 540 HTIEHEEFME VIKLENFGLY RDDMIMPGDI FLLQLCGGVD ENAIGTCAEL IFAPIDASFS 600 DDAPLLPSGF RIIPLDSGTD ASSPNRTLDL ASSLEVGPTG NRGSGDHSGH GRNGKSVMTI 660 AFQFAFEIHL QENIAAMARQ YVRSIIASVQ RVALALSPSH LGSHAGLRSL PGTPEAQTLA 720 RWICHSYRCF LGVELLKPDN DGSESILKSL WHHSDAVMCC SLKALPVFTF ANQAGLDMLE 780 TTLVALQDIT LEKILDDHGR KALSSELPQI MQQGFACLQG GVCLSSMGRP VSYERAVAWK 840 VLSDDETAHC ICFMFINWSF V

Sequence ? help Back to Top

Protein Sequence Length: 861 aa Download sequence

MLRGRRDKKR KVGNLSVQKS VMMGVTSACK ESKMGMDNGK YVRYTPEQVE ALERVYHECP  60
KPSSLRRQQL IRECPILSNI DPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM  120
EENDRLQKQV SQLVYENSYF RQQTQNANLA TTDTSCESVV TSGQQHLTPQ HPPRDASPAG  180
LLSIAEETLT EFLSKATGTA VEWVQMPGMK PGPDSIGIIA ISHGCTGVAA RACGLVGLEP  240
TRVVEILKDR PSWYHDCRAV DVLNVLSTGN SGTIELLYMQ VYAPTTLAPA RDFWLLRYTS  300
VLEDGSLVVC ERSLNNTQNG PSMPPVQHFV RAGMLPSGYL IRPCEGGGSI IHIVDHMDLE  360
PWSVPEVLRP LYESSTLLAQ RTTMAALRQL RQISQEVSQP TVTGWGRRPA ALRALSQRLS  420
KGFNEAVNGF TDEGWSIIEN DGIDDVTLLV NSSPGKVMGA NPSYANGFPS MSNAVLCAKA  480
SMLLQNVPPA ILLRFLREHR SEWADSGIDA YSAASVKAGP CNLAGPQAGS FGGQVILPLS  540
HTIEHEEFME VIKLENFGLY RDDMIMPGDI FLLQLCGGVD ENAIGTCAEL IFAPIDASFS  600
DDAPLLPSGF RIIPLDSGTD ASSPNRTLDL ASSLEVGPTG NRGSGDHSGH GRNGKSVMTI  660
AFQFAFEIHL QENIAAMARQ YVRSIIASVQ RVALALSPSH LGSHAGLRSL PGTPEAQTLA  720
RWICHSYRCF LGVELLKPDN DGSESILKSL WHHSDAVMCC SLKALPVFTF ANQAGLDMLE  780
TTLVALQDIT LEKILDDHGR KALSSELPQI MQQGFACLQG GVCLSSMGRP VSYERAVAWK  840
VLSDDETAHC ICFMFINWSF V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	11	LRGRRDKKRK
2	5	11	RRDKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein