PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056474.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 703aa MW: 78932.6 Da PI: 8.0629

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.1	1.3e-19	619	699	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev +Li++r +++r++ k+++ lWee+s+++ + g+ rsp qCk w +l ++y++ k ek+r +++pyf++++ XP_028056474.1 619 KWKPDEVTKLIKLRGLLHHRFQVVKRRMVLWEEISANLLADGIDRSPGQCKAQWTSLVQKYEESKCDEKSR-----ESWPYFEDMN 699 7******************************************************************96.....67****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MELIKKRLKE FGIFVPSRLK VFKARRRFNA GPFEIEPIRV THSIPDCCGL VLRCADGTIL 60 HTGDWKIDES PVDGKVFDRE ALEELSKEGV TLMMSDSTNV LSPGRSLSEA VVAEALMRRI 120 LAAKGRVLTT QFASNIHRLG SVKAAADITG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL 180 VKVEDIDAYA PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDLILY SAKVIPGNET 240 RVMKMLNRIS EIGSTIVMGK NEQLHSSGHG YREELDEVLK IVKPQHFLPI HGELLFLKEH 300 ELLGKSTGIR HTIVIKNGEM LGVSHLRNRR VLSNGFLSLG KENLQLMYSD GDKAFGTSTE 360 LNIEERLRIA LDGIIVVSME ILRPQDADDL TQKTLKGKIR ITTRCLWLDK GKLLDALHKA 420 AHAALSSCPV NCPLAHMERT VSEVLRKMVR KYSSKRPEVI AIAIENPSAV LSDELNARLS 480 GKSHVGSGIS DLRKVVDGHT EKRQSTEIEE EEGSSRMHSV NNTQQKLKGH GIEDERLLSE 540 EATTSGFESE ERLSLDPEDS DDFWTKYIVT APIDQLVKDS NGFVPQEEHK QKLEKERKVD 600 DSDEIPTQLK SSKPVKQNKW KPDEVTKLIK LRGLLHHRFQ VVKRRMVLWE EISANLLADG 660 IDRSPGQCKA QWTSLVQKYE ESKCDEKSRE SWPYFEDMNK IFM

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MELIKKRLKE FGIFVPSRLK VFKARRRFNA GPFEIEPIRV THSIPDCCGL VLRCADGTIL  60
HTGDWKIDES PVDGKVFDRE ALEELSKEGV TLMMSDSTNV LSPGRSLSEA VVAEALMRRI  120
LAAKGRVLTT QFASNIHRLG SVKAAADITG RKLVFVGMSL RTYLDAAWKD GKAPIDPSTL  180
VKVEDIDAYA PKDLLIVTTG SQAEPRAALN LASYGSSHSL KLSKEDLILY SAKVIPGNET  240
RVMKMLNRIS EIGSTIVMGK NEQLHSSGHG YREELDEVLK IVKPQHFLPI HGELLFLKEH  300
ELLGKSTGIR HTIVIKNGEM LGVSHLRNRR VLSNGFLSLG KENLQLMYSD GDKAFGTSTE  360
LNIEERLRIA LDGIIVVSME ILRPQDADDL TQKTLKGKIR ITTRCLWLDK GKLLDALHKA  420
AHAALSSCPV NCPLAHMERT VSEVLRKMVR KYSSKRPEVI AIAIENPSAV LSDELNARLS  480
GKSHVGSGIS DLRKVVDGHT EKRQSTEIEE EEGSSRMHSV NNTQQKLKGH GIEDERLLSE  540
EATTSGFESE ERLSLDPEDS DDFWTKYIVT APIDQLVKDS NGFVPQEEHK QKLEKERKVD  600
DSDEIPTQLK SSKPVKQNKW KPDEVTKLIK LRGLLHHRFQ VVKRRMVLWE EISANLLADG  660
IDRSPGQCKA QWTSLVQKYE ESKCDEKSRE SWPYFEDMNK IFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein