PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056403.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 319aa MW: 35657.6 Da PI: 8.3204

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.4	2.2e-17	164	218	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_028056403.1 164 RKKLRLSKEQSAFLEHSFKDHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 218 788899***********************************************98 PP
2	HD-ZIP_I/II	125.9	1.8e-40	164	253	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LE+sF+ +++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +l XP_028056403.1 164 RKKLRLSKEQSAFLEHSFKDHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCFEALTEENRRLQKELQELR-TL 253 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MELGLSLGDA HYAPNSFSLL GPLDRSKDKG EEQRRGSSSS SDSQPVQLDL LPFTPVPRNQ 60 PTSQFRFPWL TENLLSEPGS SDGSRRRIDR VNRLPLAVED GEDGGSLSSP NSTVSSFQME 120 DLSIYTSGRV KRDLETTILN EFDKDHQRGG SSRGSDEEEN GLARKKLRLS KEQSAFLEHS 180 FKDHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK QTEVDCEYLK RCFEALTEEN 240 RRLQKELQEL RTLKASQSFY KQPPATTLTM CPSCERVAST TTTTTTVANP TTTGSAATAT 300 ANNTVYPFIS SQSHAQEAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	213	221	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-63	HD-ZIP family protein