PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028056013.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 429aa MW: 46831.5 Da PI: 5.5029

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028056013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.7e-06	2	44	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 e++C+ ++ ++ +C++++ lC C + H+ H++ XP_028056013.1 2 EPVCEFCGVVRAVVYCKSDSAKLCLRCDTCVHSAnylsrrHSR 44 689****99*******************55667777776 PP
2	zf-B_box	22.7	2e-07	45	87	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedCllee..Hkg..Htvvp 41 +C+++++++++ C d ++ lC++C ++ +g H+++p XP_028056013.1 45 SLICDKCNSQPAIARCMDEKMSLCQSCDWNGngCSGpgHSRQP 87 679************************9887666556666655 PP
3	CCT	62.7	1.1e-21	373	416	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_028056013.1 373 RDKAKMRYNEKKKTRMFGKQIRYASRKARADTRKRVKGRFVKAG 416 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MEPVCEFCGV VRAVVYCKSD SAKLCLRCDT CVHSANYLSR RHSRSLICDK CNSQPAIARC 60 MDEKMSLCQS CDWNGNGCSG PGHSRQPLRC YSGCPSLAEF SRIWSSVLDV PPSNGGFEQG 120 FGPPGTLPIN DNCFLSPCLE NTSNEGSVGL VTSELNCDKF EPWIGPSTVI PPSPNFLPLC 180 SKDQTLTFPK GSNLPKGHSS YKNLEINDGE DLCEGLNMDD VELNFESCDE IFDSSRGQST 240 YNFDGEGTNC QLMEKNASVT ESNGHVESAI EAASSTGKQE CMAFQSSRVV GSANLMQTMS 300 GGLNGMLINP SCNSNINLSF PTGQVHSSIS LSLSNITGES SVADYQDCGL SPVFLTGESP 360 WESNLEVSCP QARDKAKMRY NEKKKTRMFG KQIRYASRKA RADTRKRVKG RFVKAGEAYD 420 YDPLVTRNF

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MEPVCEFCGV VRAVVYCKSD SAKLCLRCDT CVHSANYLSR RHSRSLICDK CNSQPAIARC  60
MDEKMSLCQS CDWNGNGCSG PGHSRQPLRC YSGCPSLAEF SRIWSSVLDV PPSNGGFEQG  120
FGPPGTLPIN DNCFLSPCLE NTSNEGSVGL VTSELNCDKF EPWIGPSTVI PPSPNFLPLC  180
SKDQTLTFPK GSNLPKGHSS YKNLEINDGE DLCEGLNMDD VELNFESCDE IFDSSRGQST  240
YNFDGEGTNC QLMEKNASVT ESNGHVESAI EAASSTGKQE CMAFQSSRVV GSANLMQTMS  300
GGLNGMLINP SCNSNINLSF PTGQVHSSIS LSLSNITGES SVADYQDCGL SPVFLTGESP  360
WESNLEVSCP QARDKAKMRY NEKKKTRMFG KQIRYASRKA RADTRKRVKG RFVKAGEAYD  420
YDPLVTRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-105	CO-like family protein