PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028055850.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 727aa MW: 81563.8 Da PI: 8.2324

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028055850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.1	1.3e-19	643	723	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +ev +Li++r +++r++ k+++ lWee+s+++ + g+ rsp qCk w +l ++y++ k ek+r +++pyf++++ XP_028055850.1 643 KWKPDEVTKLIKLRGLLHHRFQVVKRRMVLWEEISANLLADGIDRSPGQCKAQWTSLVQKYEESKCDEKSR-----ESWPYFEDMN 723 7******************************************************************96.....67****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MVTKITLVIR ALDSHTPIFA SSFTMELIKK RLKEFGIFVP SRLKVFKARR RFNAGPFEIE 60 PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDESPVDGKV FDREALEELS KEGVTLMMSD 120 STNVLSPGRS LSEAVVAEAL MRRILAAKGR VLTTQFASNI HRLGSVKAAA DITGRKLVFV 180 GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS 240 SHSLKLSKED LILYSAKVIP GNETRVMKML NRISEIGSTI VMGKNEQLHS SGHGYREELD 300 EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTIVIK NGEMLGVSHL RNRRVLSNGF 360 LSLGKENLQL MYSDGDKAFG TSTELNIEER LRIALDGIIV VSMEILRPQD ADDLTQKTLK 420 GKIRITTRCL WLDKGKLLDA LHKAAHAALS SCPVNCPLAH MERTVSEVLR KMVRKYSSKR 480 PEVIAIAIEN PSAVLSDELN ARLSGKSHVG SGISDLRKVV DGHTEKRQST EIEEEEGSSR 540 MHSVNNTQQK LKGHGIEDER LLSEEATTSG FESEERLSLD PEDSDDFWTK YIVTAPIDQL 600 VKDSNGFVPQ EEHKQKLEKE RKVDDSDEIP TQLKSSKPVK QNKWKPDEVT KLIKLRGLLH 660 HRFQVVKRRM VLWEEISANL LADGIDRSPG QCKAQWTSLV QKYEESKCDE KSRESWPYFE 720 DMNKIFM

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MVTKITLVIR ALDSHTPIFA SSFTMELIKK RLKEFGIFVP SRLKVFKARR RFNAGPFEIE  60
PIRVTHSIPD CCGLVLRCAD GTILHTGDWK IDESPVDGKV FDREALEELS KEGVTLMMSD  120
STNVLSPGRS LSEAVVAEAL MRRILAAKGR VLTTQFASNI HRLGSVKAAA DITGRKLVFV  180
GMSLRTYLDA AWKDGKAPID PSTLVKVEDI DAYAPKDLLI VTTGSQAEPR AALNLASYGS  240
SHSLKLSKED LILYSAKVIP GNETRVMKML NRISEIGSTI VMGKNEQLHS SGHGYREELD  300
EVLKIVKPQH FLPIHGELLF LKEHELLGKS TGIRHTIVIK NGEMLGVSHL RNRRVLSNGF  360
LSLGKENLQL MYSDGDKAFG TSTELNIEER LRIALDGIIV VSMEILRPQD ADDLTQKTLK  420
GKIRITTRCL WLDKGKLLDA LHKAAHAALS SCPVNCPLAH MERTVSEVLR KMVRKYSSKR  480
PEVIAIAIEN PSAVLSDELN ARLSGKSHVG SGISDLRKVV DGHTEKRQST EIEEEEGSSR  540
MHSVNNTQQK LKGHGIEDER LLSEEATTSG FESEERLSLD PEDSDDFWTK YIVTAPIDQL  600
VKDSNGFVPQ EEHKQKLEKE RKVDDSDEIP TQLKSSKPVK QNKWKPDEVT KLIKLRGLLH  660
HRFQVVKRRM VLWEEISANL LADGIDRSPG QCKAQWTSLV QKYEESKCDE KSRESWPYFE  720
DMNKIFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein