PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028054896.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 768aa MW: 84631.5 Da PI: 6.1478

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028054896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	112	167	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_028054896.1 112 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 167 7999************************************************9877 PP
2	START	226.7	6.9e-71	284	507	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 + ++a++el k+a+a++p+W +s+ e++n+de++++f+ +++ +s+ea+r++ +v+ +l++lv++++d++ qW+e+++ ka+t+ XP_028054896.1 284 IVNQAMEELKKMASAGDPLWIRSVetgrEILNYDEYMREFSVDNSsngrpkRSIEASRETSIVFVDLPRLVQSFMDVN-QWKEMFPcmisKAATV 377 56789*********************************998889****************************.************ PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +vis+g g++qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvSvd +++ ++s+v+++++pSg++ie+ksngh+kv+wveh XP_028054896.1 378 DVISNGegpnksGVVQLMFAELQMLTPMVPtREVYFVRFCKQLSADQWAIVDVSVDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVVWVEHL 471 ********************************************************98.9*************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ ++++ ++rs+v+sg+a+ga++w atlq+qce+ XP_028054896.1 472 ECQRSIVPTMYRSIVNSGIAFGARHWIATLQQQCER 507 ********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MGVDMSNPPT SRTKDFFASP ALSLSLAGIF RDGAAAAAAA NMEVEEGEEG SVGGGGGARG 60 RREDTVEISS ENSGHARSRS DEDFDGDGDH DDDGDGGDGD GDGGDGNKKK KRKKYHRHTA 120 EQIREMEALF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKT 180 EMEKLRDETK SLRETIKKAA CSNCGFATSS KDASVATEEQ QLRIENARLK AEIEKLRVAV 240 GKCPPGTSPS NSSCSASGND QENRSSLDFY SGIFGLEKSR IMEIVNQAME ELKKMASAGD 300 PLWIRSVETG REILNYDEYM REFSVDNSSN GRPKRSIEAS RETSIVFVDL PRLVQSFMDV 360 NQWKEMFPCM ISKAATVDVI SNGEGPNKSG VVQLMFAELQ MLTPMVPTRE VYFVRFCKQL 420 SADQWAIVDV SVDKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVVWVEH LECQRSIVPT 480 MYRSIVNSGI AFGARHWIAT LQQQCERLVF SMATNVPTKD SNGVATLAGR KSILKLAQRM 540 TWSFCRAIGA SSYHTWTKVS TKTGDDIRVA SRKNLNDPGE PLGVIMCAVS SVWLPVSHHV 600 LFDFIRDEAR RNEWDIMSNG GPVQSIANLA KGQDRGNAVT VQTMKSKENS MWILQDSCTN 660 AYESMVVYAP VDITGMQSVM TGCDASNIAV LPSGFSILPD GLESRPMVIT SRPEEKSTEG 720 GSLLTIAFQI LINTSPTAKI TMESVESVNT LISCTVRNIK TSLQCEDG

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MGVDMSNPPT SRTKDFFASP ALSLSLAGIF RDGAAAAAAA NMEVEEGEEG SVGGGGGARG  60
RREDTVEISS ENSGHARSRS DEDFDGDGDH DDDGDGGDGD GDGGDGNKKK KRKKYHRHTA  120
EQIREMEALF KESPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKT  180
EMEKLRDETK SLRETIKKAA CSNCGFATSS KDASVATEEQ QLRIENARLK AEIEKLRVAV  240
GKCPPGTSPS NSSCSASGND QENRSSLDFY SGIFGLEKSR IMEIVNQAME ELKKMASAGD  300
PLWIRSVETG REILNYDEYM REFSVDNSSN GRPKRSIEAS RETSIVFVDL PRLVQSFMDV  360
NQWKEMFPCM ISKAATVDVI SNGEGPNKSG VVQLMFAELQ MLTPMVPTRE VYFVRFCKQL  420
SADQWAIVDV SVDKVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVVWVEH LECQRSIVPT  480
MYRSIVNSGI AFGARHWIAT LQQQCERLVF SMATNVPTKD SNGVATLAGR KSILKLAQRM  540
TWSFCRAIGA SSYHTWTKVS TKTGDDIRVA SRKNLNDPGE PLGVIMCAVS SVWLPVSHHV  600
LFDFIRDEAR RNEWDIMSNG GPVQSIANLA KGQDRGNAVT VQTMKSKENS MWILQDSCTN  660
AYESMVVYAP VDITGMQSVM TGCDASNIAV LPSGFSILPD GLESRPMVIT SRPEEKSTEG  720
GSLLTIAFQI LINTSPTAKI TMESVESVNT LISCTVRNIK TSLQCEDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	113	KKKKRK
2	108	114	KKKKRKK
3	110	114	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein