PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028054338.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 425aa MW: 48865 Da PI: 7.0766

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028054338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.5	4.8e-25	107	205	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 +Wt+++v++Li+a+++++++ + kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t +++++ ++ XP_028054338.1 107 KWTDEMVKLLITAVSYIGDEATFDFngggrtsmsavlPKKGKWKSISKVMDERGYHVSPQQCEDKFNDLNKRYKRLNDILGRGTsGQVVENPTLL 201 7************8877777542234456677787********************************************625677888888 PP trihelix 83 dqle 86 d+++ XP_028054338.1 202 DSMD 205 8886 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MEGKSSASSN LIPGGDGGSY SFLGLQGSMQ VNQHQNLHSF QRFLSLPEKN VMPLRASKMQ 60 ETDQPVSFLN FDNKVGRVKI SASDDDGSNV VERGVDGKKE FAWHRVKWTD EMVKLLITAV 120 SYIGDEATFD FNGGGRTSMS AVLPKKGKWK SISKVMDERG YHVSPQQCED KFNDLNKRYK 180 RLNDILGRGT SGQVVENPTL LDSMDLSEKA KDDVRKILSS KQLFYKEMCS YHNKNRLYLP 240 HDQALQQSLQ LALISKDNFE HYELTTLHKP DDLDEEDQDS ASDDRSGKAE EGHAICNSNG 300 REFDFPGVSA KRKKREEEEN KVVGSGNALN LLSPVPHPVT NFANVNQERF QNRWMMSRSL 360 RLEEQKLKIQ AQMLELERQR LRWYRVNEQE DMELEKMRME NERMKLKNER LALEIKRREM 420 GADYN

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MEGKSSASSN LIPGGDGGSY SFLGLQGSMQ VNQHQNLHSF QRFLSLPEKN VMPLRASKMQ  60
ETDQPVSFLN FDNKVGRVKI SASDDDGSNV VERGVDGKKE FAWHRVKWTD EMVKLLITAV  120
SYIGDEATFD FNGGGRTSMS AVLPKKGKWK SISKVMDERG YHVSPQQCED KFNDLNKRYK  180
RLNDILGRGT SGQVVENPTL LDSMDLSEKA KDDVRKILSS KQLFYKEMCS YHNKNRLYLP  240
HDQALQQSLQ LALISKDNFE HYELTTLHKP DDLDEEDQDS ASDDRSGKAE EGHAICNSNG  300
REFDFPGVSA KRKKREEEEN KVVGSGNALN LLSPVPHPVT NFANVNQERF QNRWMMSRSL  360
RLEEQKLKIQ AQMLELERQR LRWYRVNEQE DMELEKMRME NERMKLKNER LALEIKRREM  420
GADYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	2e-88	Trihelix family protein