PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028053857.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 360aa MW: 40691.1 Da PI: 6.7035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028053857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	222	244	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F++ L H +H XP_028053857.1 222 YKCETCHRVFRSYQALGGHRASH 244 9***********99999998887 PP
2	zf-C2H2	10.9	0.0015	273	295	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H r+H XP_028053857.1 273 HECPICYRVFASGQALGGHKRSH 295 79*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEKQRCKLCF KSFVNGRALG GHMRSHMMNL YVPPKPEQQQ QQHNDDEDDR RLGEEAESTP 60 SSSSEEEEEN EEKGLLSYGL RENPKKSIRL VDPEFSFAGS SVVLQDRESE TESSKNPTRR 120 RSKRIRRSGI PDPDRHHCHN QTSKEPESKK PKSGQPGKPE SPVSSISETS PEEELAYCLL 180 MLSRDKWVLR NEEKDEEEDE QTEYDSDEFK KQSNKTRIRG KYKCETCHRV FRSYQALGGH 240 RASHKKNRAH NNGGSIREPP LETEVRVTEE KVHECPICYR VFASGQALGG HKRSHVIGSS 300 SSTIITTTTS TVVATKPVKS KLGSEKLIDL NLPAPIDEDE ISQVEVSVVS DAEFVNTRGA

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEKQRCKLCF KSFVNGRALG GHMRSHMMNL YVPPKPEQQQ QQHNDDEDDR RLGEEAESTP  60
SSSSEEEEEN EEKGLLSYGL RENPKKSIRL VDPEFSFAGS SVVLQDRESE TESSKNPTRR  120
RSKRIRRSGI PDPDRHHCHN QTSKEPESKK PKSGQPGKPE SPVSSISETS PEEELAYCLL  180
MLSRDKWVLR NEEKDEEEDE QTEYDSDEFK KQSNKTRIRG KYKCETCHRV FRSYQALGGH  240
RASHKKNRAH NNGGSIREPP LETEVRVTEE KVHECPICYR VFASGQALGG HKRSHVIGSS  300
SSTIITTTTS TVVATKPVKS KLGSEKLIDL NLPAPIDEDE ISQVEVSVVS DAEFVNTRGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-59	C2H2 family protein