PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028053505.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 541aa MW: 59994.2 Da PI: 7.4975

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028053505.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.2e-15	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed+ l++av + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_028053505.1 59 KGGWTPDEDDTLKRAVGVFKGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	58.7	1.3e-18	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ + gR +kqc++rw+++l XP_028053505.1 111 KGPWTQEEDDKIIELVSKYGPTKWSVIAKSLR-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	57	4.3e-18	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++ XP_028053505.1 163 KDAWTVEEELALMKAHHRHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MAEVKIEEPC LENKQSTVAL SSSVSEGSGS VTLKSPGICS PATTSPSHGR TSGPIRRAKG 60 GWTPDEDDTL KRAVGVFKGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDD 120 KIIELVSKYG PTKWSVIAKS LRGRIGKQCR ERWHNHLNPC IKKDAWTVEE ELALMKAHHR 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLTTGN LPPVAKNAIQ NGVKDTNRTA 240 PTGILLECTN KGSESTTQTS SGTTDVCKIE DDSKDPESLT PFQDMGASSS VPANESVDSE 300 VVKCYPKSSD IDLRSSYSNL VQKFERCRTN DDIYQDTPQL EIPTYGSLHY QPPQLESFVP 360 LDSDLLNMSW MQQESYSSPI TSPVNFFTPP RVKGYFFSQS PESILKIAAK SFPNTPSILR 420 KRKTQETPLP SNKLGKADGE VIQDGVHTSD GQEQTTNTSG LQDGSLHGSP AYLGNGITEL 480 FNGKAFNASP PYRLRSKRTV VFKSVEKQLE FDFDKEHQDG DNKSVDSIVK GNPPVTEDCS 540 S

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MAEVKIEEPC LENKQSTVAL SSSVSEGSGS VTLKSPGICS PATTSPSHGR TSGPIRRAKG  60
GWTPDEDDTL KRAVGVFKGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDD  120
KIIELVSKYG PTKWSVIAKS LRGRIGKQCR ERWHNHLNPC IKKDAWTVEE ELALMKAHHR  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLTTGN LPPVAKNAIQ NGVKDTNRTA  240
PTGILLECTN KGSESTTQTS SGTTDVCKIE DDSKDPESLT PFQDMGASSS VPANESVDSE  300
VVKCYPKSSD IDLRSSYSNL VQKFERCRTN DDIYQDTPQL EIPTYGSLHY QPPQLESFVP  360
LDSDLLNMSW MQQESYSSPI TSPVNFFTPP RVKGYFFSQS PESILKIAAK SFPNTPSILR  420
KRKTQETPLP SNKLGKADGE VIQDGVHTSD GQEQTTNTSG LQDGSLHGSP AYLGNGITEL  480
FNGKAFNASP PYRLRSKRTV VFKSVEKQLE FDFDKEHQDG DNKSVDSIVK GNPPVTEDCS  540
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-147	MYB family protein