PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028053295.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 460aa MW: 51522.4 Da PI: 7.8073

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028053295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	135	181	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l+++v+q+G + W+ Ia++m gR +kqc++rw+++l XP_028053295.1 135 KGKWTDEEDRMLLKLVRQHGVRKWAQIAEKML-GRAGKQCRERWHSHL 181 79***************************9.**********986 PP
2	Myb_DNA-binding	52.9	8.4e-17	187	229	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eE+ +lv+a+k+ G++ W+ I + ++ gRt++++k++w+ XP_028053295.1 187 KDCWSEEEEIKLVKAHKEIGNK-WAEIGKQIP-GRTENSIKNHWN 229 578*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MEGVGELGYG YLQNKPLLYR PSPPLTAIER FLLGNNNHFS LQPTPNIVKS NEPHIPSSGF 60 HGFSPLRGAI GSFSGRFSWS CVPETRFTDR LRETVNRTQD TNLNVGLNEE NISVPRNSKG 120 VVKTVKDRSF TPQIKGKWTD EEDRMLLKLV RQHGVRKWAQ IAEKMLGRAG KQCRERWHSH 180 LRPDIKKDCW SEEEEIKLVK AHKEIGNKWA EIGKQIPGRT ENSIKNHWNA TKRKLNSKGK 240 IKKSEAQIRR DLTRSTILKN YIKSMNLSDA GTDIAPPITG STTTPTGSTV TEEDFSNQSS 300 LSLPSDLSEE SIDNSPHFMY QSYDDELNFM TNFFGNKDDQ LPPPPPSIDN NNKDKGVIES 360 PTVQNDHANN VLGHSGLSGV NSFGFNNNNG DHQFLNDKNN GDHQFVNDMI VGGGGFSSSI 420 TEPNMFINTH IEEPRKTHLS SDFYLPNLFD GATTTSPSMG

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MEGVGELGYG YLQNKPLLYR PSPPLTAIER FLLGNNNHFS LQPTPNIVKS NEPHIPSSGF  60
HGFSPLRGAI GSFSGRFSWS CVPETRFTDR LRETVNRTQD TNLNVGLNEE NISVPRNSKG  120
VVKTVKDRSF TPQIKGKWTD EEDRMLLKLV RQHGVRKWAQ IAEKMLGRAG KQCRERWHSH  180
LRPDIKKDCW SEEEEIKLVK AHKEIGNKWA EIGKQIPGRT ENSIKNHWNA TKRKLNSKGK  240
IKKSEAQIRR DLTRSTILKN YIKSMNLSDA GTDIAPPITG STTTPTGSTV TEEDFSNQSS  300
LSLPSDLSEE SIDNSPHFMY QSYDDELNFM TNFFGNKDDQ LPPPPPSIDN NNKDKGVIES  360
PTVQNDHANN VLGHSGLSGV NSFGFNNNNG DHQFLNDKNN GDHQFVNDMI VGGGGFSSSI  420
TEPNMFINTH IEEPRKTHLS SDFYLPNLFD GATTTSPSMG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	2e-61	MYB family protein