PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028052138.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 359aa MW: 39446.1 Da PI: 6.3153

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028052138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.5	2.7e-08	11	43	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ +++lfC+ + +lC C +++H XP_028052138.1 11 KQCDSCKLAPATLFCKADTAFLCVGCDSKIHAA 43 68*****************************54 PP
2	zf-B_box	28	4.5e-09	53	95	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ ++++ C+ + lC +C +H+ H++ XP_028052138.1 53 VWMCDVCEQAPASFTCKADAASLCVTCDRDIHSAnplarrHER 95 689*****************************65777777776 PP
3	CCT	69.6	7.8e-24	286	330	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae XP_028052138.1 286 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 330 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGAESWSMAA KQCDSCKLAP ATLFCKADTA FLCVGCDSKI HAANKLASRH ARVWMCDVCE 60 QAPASFTCKA DAASLCVTCD RDIHSANPLA RRHERFPVTP FYEPAETVAA KSSAVHGGAD 120 DRYFDDEGGE AEEAEAASWL LPNPNHKIVD DSSDLKSSEY LFSDIDPYLD LDIMAGDQKP 180 HQHHQQQQYI TPADGVVPVQ IKNIQQPPQP PSLVEGLPCY DVDYSGSKPF LYNFNSHQSL 240 SHSVSSSSLE VGVVPDHNAM ADVSTTFGHQ NAADTVPINP VSGIDREARV LRYREKRKNR 300 KFEKTIRYAS RKAYAETRPR IKGRFAKRAE IQLDSIYNNS SSPAAFIAAD AGYGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGAESWSMAA KQCDSCKLAP ATLFCKADTA FLCVGCDSKI HAANKLASRH ARVWMCDVCE  60
QAPASFTCKA DAASLCVTCD RDIHSANPLA RRHERFPVTP FYEPAETVAA KSSAVHGGAD  120
DRYFDDEGGE AEEAEAASWL LPNPNHKIVD DSSDLKSSEY LFSDIDPYLD LDIMAGDQKP  180
HQHHQQQQYI TPADGVVPVQ IKNIQQPPQP PSLVEGLPCY DVDYSGSKPF LYNFNSHQSL  240
SHSVSSSSLE VGVVPDHNAM ADVSTTFGHQ NAADTVPINP VSGIDREARV LRYREKRKNR  300
KFEKTIRYAS RKAYAETRPR IKGRFAKRAE IQLDSIYNNS SSPAAFIAAD AGYGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-99	CO-like family protein