PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc044615.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 301aa    MW: 35077.3 Da    PI: 8.4347
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc044615.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-274089150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           kri+n++ rqvtf+kRrng+ KKA+EL vLCdae+a+i+fs++g+lyey+
  Cse_sc044615.1_g010.1 40 KRIDNNTSRQVTFCKRRNGLQKKAYELAVLCDAEIALIVFSTRGRLYEYA 89
                           79***********************************************8 PP
2K-box66.59e-23115196991
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             +e + +++qqe+++L+++i++ q  +Rhl Ge+L+sL++keL+qLe+++e+++++iRskK el  +   +l+ k  e+++ +
  Cse_sc044615.1_g010.1 115 IQEFNIQHYQQESKRLRQQIQMCQDYNRHLSGEGLDSLNMKELKQLETRVERGISRIRSKKVEL-EDYNTYLRSKITENERVQ 196
                            678899*******************************************************995.566667777766666554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MEEHDSQLHQ VGHTARDLEI YSEKKVVYMK NMGRGKIEIK RIDNNTSRQV TFCKRRNGLQ  60
KKAYELAVLC DAEIALIVFS TRGRLYEYAN NDMNSTIDKY KKEKETSNAP NTCSIQEFNI  120
QHYQQESKRL RQQIQMCQDY NRHLSGEGLD SLNMKELKQL ETRVERGISR IRSKKVELED  180
YNTYLRSKIT ENERVQQQEE VDAGQEYNVI QAYLARNTLQ LNIMEPFEDN RSDYSLPLTK  240
SLHIGHNLPK QEDCANFWGN PRNLTTSLPY STVQPLHSTG QIGAGKFRGH HHISGNVRSE  300
Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.23e-80MIKC_MADS family protein