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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc015774.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 236aa MW: 27179.3 Da PI: 9.4081 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.5 | 1.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+v +++fs +gkl e+++ Cse_sc015774.1_g010.1 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDADVGLVVFSAKGKLCEFAT 59 79***********************************************86 PP | |||||||
2 | K-box | 102.2 | 6.7e-34 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 y++++ ++++++ + +++ e+akLk + e Lq++qRhl+GedL+sLslkeLq+Le+q++++lk+iR +Kn++++e+i+ lqkk kelq Cse_sc015774.1_g010.1 75 YAERQLTATDNESHGRWTLEHAKLKCRFELLQKTQRHLKGEDLDSLSLKELQNLEHQIDTALKHIRLRKNQMMFESISVLQKKDKELQ 162 5677888889999*************************************************************************** PP K-box 89 eenkaLrkklee 100 ++n+ L+kk++e Cse_sc015774.1_g010.1 163 NQNNVLSKKVKE 174 *********986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
MGRGRVTLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD ADVGLVVFSA KGKLCEFATD 60 ASMERILERY ERYSYAERQL TATDNESHGR WTLEHAKLKC RFELLQKTQR HLKGEDLDSL 120 SLKELQNLEH QIDTALKHIR LRKNQMMFES ISVLQKKDKE LQNQNNVLSK KVKEVEKDLA 180 AQQPLVEQQN PDKMLHLDPY ISAPCQVGGD GVVEKIPGQA QPSIVLPPWM LQHMNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-95 | MIKC_MADS family protein |