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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc012971.1_g050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26875.4 Da PI: 10.2756 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.1 | 6.5e-25 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n + rqvtfskR g+lKKA+EL vLCdaev ++ifsstg+l+ y+s Cse_sc012971.1_g050.1 10 RIDNVTSRQVTFSKRSRGLLKKAKELAVLCDAEVGLVIFSSTGRLHQYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 76.8 | 5.7e-26 | 82 | 171 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + +++ e ++ e+a+L+k+++nLq++qR+llG++L+ L++++Lq+Le qLe+slk++R K+++l+++++el k+ + +enk+L+k Cse_sc012971.1_g050.1 82 NPTSEVEFWRGEVARLRKQLQNLQQSQRQLLGQELNGLNVENLQNLEVQLETSLKHVRRNKEQILTDELKELHWKKSLMAHENKELHK 169 567889********************************************************************************** PP K-box 97 kl 98 k+ Cse_sc012971.1_g050.1 170 KI 171 98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGRGKIAIQR IDNVTSRQVT FSKRSRGLLK KAKELAVLCD AEVGLVIFSS TGRLHQYASS 60 SMEKVTERYR TAKDEHHSQL LNPTSEVEFW RGEVARLRKQ LQNLQQSQRQ LLGQELNGLN 120 VENLQNLEVQ LETSLKHVRR NKEQILTDEL KELHWKKSLM AHENKELHKK INLLHQQRAE 180 LQKKIYGSRS SDEANRNTNA SCSLSTDNSL NPPRLSQQPH NNDIPEEAMN LRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-64 | MIKC_MADS family protein |