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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc012654.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26892.1 Da PI: 6.7841 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.9 | 2e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtf+kR+ng+lKKA+ELSvLCdaeva+iifs++gklye++s Cse_sc012654.1_g020.1 10 RIENKINRQVTFAKRKNGLLKKAYELSVLCDAEVAIIIFSNDGKLYEFCS 59 8***********************************************96 PP | |||||||
2 | K-box | 90.5 | 3e-30 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ +++s++qe+ kLk++++ Lq++qRh+ Ge+Le+L keL qLe+qL++sl+++Rs+K++++l+q++ lq+ke++l e nk+Lr Cse_sc012654.1_g020.1 82 HQDPDTQSCYQEYLKLKAKVDILQQSQRHYNGEELEQLGSKELDQLERQLDSSLRQVRSTKTKHMLDQLSGLQQKEQSLLEVNKSLRL 169 678899********************************************************************************** PP K-box 97 klee 100 klee Cse_sc012654.1_g020.1 170 KLEE 173 9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MGRGKVELRR IENKINRQVT FAKRKNGLLK KAYELSVLCD AEVAIIIFSN DGKLYEFCSG 60 SSMSKTLERY HRCSYGAMEA NHQDPDTQSC YQEYLKLKAK VDILQQSQRH YNGEELEQLG 120 SKELDQLERQ LDSSLRQVRS TKTKHMLDQL SGLQQKEQSL LEVNKSLRLK LEESTAAYQL 180 SWAAHERNFE NRQQLPPAHQ EAYIQRLDCD ENMQNGYNNE APNDEIDARN TS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-84 | MIKC_MADS family protein |