PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc009650.1_g020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family AP2
Protein Properties Length: 362aa    MW: 41294.4 Da    PI: 5.7726
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc009650.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-184091155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ +l+g
  Cse_sc009650.1_g020.1 40 CSYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDLAEEAALAYDQAAYALRG 91
                           67********.**********44465..*************************98 PP

2AP258.91.3e-18222271355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+ + +g
  Cse_sc009650.1_g020.1 222 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEEAALAYDQAAYAVRG 271
                            9*******.**********44465..**********************99887 PP

Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    
MDTSFSSMEY SFTHHHFLPF NENDSEEMLL FGCLDKEKEC SYRGVRKRPW GKYAAEIRDS  60
TRNGVRVWLG TFDLAEEAAL AYDQAAYALR GSGAVLNFSE DLVYESLRKM DYKYEEGSSP  120
VLALKRTHSM KRKSMNTKAK KKKEKDAKVE NVVVLEDLGR DYLEELLGFS ESCSSSSSTS  180
TNQHVLPFNE NDSEEMLLFG VIADVHYVNQ EDCLEREKEF TYRGVRKRPW GKYAAEIRDS  240
TRNGVRVWLG TFDTAEEAAL AYDQAAYAVR GSGTVLNFSE EFVYESLVKM DYKYEEGGSP  300
VLALKRKHTI KRKSMAKKMK KKEDKVVKVE NVVVLEDLGR DYLEELLGLS ESCSSSSSSS  360
SW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-41ERF family protein