PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc009312.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MIKC_MADS

Protein Properties

Length: 516aa MW: 56496.3 Da PI: 5.1738

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc009312.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.7	4e-25	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA+ELSvLCdae+ +iifs +gk+ye + Cse_sc009312.1_g030.1 10 RIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLIIFSAHGKMYELA 58 8*********************************************965 PP
2	K-box	47.1	1e-16	81	170	8	97
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 +++e+k +++ e++ Lk+ei+ Lq+ +R + + ++++l eL+ Le++Le + +iRs K++++ ++i+ l++ke+ l+ +nk+L+ Cse_sc009312.1_g030.1 81 QADEKKLVESKMEVNMLKNEIDVLQKGLRYMFEGGAGKMTLDELRILENNLEVWMYHIRSAKMDIMAQEIQLLKNKEEILSAANKCLQ 168 477889999******************************************************************************9 PP K-box 96 kk 97 ++ Cse_sc009312.1_g030.1 169 EQ 170 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MARGKVQMRR IENPVHRQVT FCKRRSGLLK KAKELSVLCD AEIGLIIFSA HGKMYELATN 60 GSMQGLVEKY MKSSRCSVEE QADEKKLVES KMEVNMLKNE IDVLQKGLRY MFEGGAGKMT 120 LDELRILENN LEVWMYHIRS AKMDIMAQEI QLLKNKEEIL SAANKCLQEQ DGLGDYDWSD 180 QIEEGPNAAF LASEASKEHN FALMAYASSS GSDSEDSPLG AVNTARSDED RLEPDNELTV 240 DDYVHEGFFD DPPLGPDYTG RSGEDILERI NELTGQCSKM EDKISGLQEL TVLQGKTIRR 300 LKHRVLVLER VKRPGLAVLK ALRRLKKKVN SSSTLNVDDV SKQGRSDGMT SGEAGNVSVG 360 VTMEEDVDSG DQEFVVSDKA GNAVVLEELR NVDIVQNTST DGISETPVST FVTTDVVSDL 420 AIVSDTVIPT AIITTSTIVT TLSALPSKSK EVEKEAASTL INLSKTLSIP TSIIAPALSI 480 QSTATKSKGK PKGKSLVIGE PVKKKFVKSN VGKGKE

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MARGKVQMRR IENPVHRQVT FCKRRSGLLK KAKELSVLCD AEIGLIIFSA HGKMYELATN  60
GSMQGLVEKY MKSSRCSVEE QADEKKLVES KMEVNMLKNE IDVLQKGLRY MFEGGAGKMT  120
LDELRILENN LEVWMYHIRS AKMDIMAQEI QLLKNKEEIL SAANKCLQEQ DGLGDYDWSD  180
QIEEGPNAAF LASEASKEHN FALMAYASSS GSDSEDSPLG AVNTARSDED RLEPDNELTV  240
DDYVHEGFFD DPPLGPDYTG RSGEDILERI NELTGQCSKM EDKISGLQEL TVLQGKTIRR  300
LKHRVLVLER VKRPGLAVLK ALRRLKKKVN SSSTLNVDDV SKQGRSDGMT SGEAGNVSVG  360
VTMEEDVDSG DQEFVVSDKA GNAVVLEELR NVDIVQNTST DGISETPVST FVTTDVVSDL  420
AIVSDTVIPT AIITTSTIVT TLSALPSKSK EVEKEAASTL INLSKTLSIP TSIIAPALSI  480
QSTATKSKGK PKGKSLVIGE PVKKKFVKSN VGKGKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	3e-63	MIKC_MADS family protein