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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc008234.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | AP2 | ||||||||
Protein Properties | Length: 378aa MW: 42757.4 Da PI: 5.6668 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4.3e-11 | 59 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ ++++e Aa+ ++ a++k++g Cse_sc008234.1_g020.1 59 SIYRGVTRHRWTGRFEAHLWDkGTWNSiQNKKGKQRAYDSEEAAARTYDLAALKYWG 115 57*******************8888999775545599******************98 PP | |||||||
2 | AP2 | 55.4 | 1.5e-17 | 158 | 210 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I + +k+ +lg++gt eeAa+a++ a+ +++g+ Cse_sc008234.1_g020.1 158 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYGTQEEAAAAYDLAAIEYRGA 210 89****99**********988422...5*************************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence |
MKRRRLSPTC SSSCSSSSSC INELQLPKAK KLKRPNNKNK VNNKNLGSNQ NAETARRSSI 60 YRGVTRHRWT GRFEAHLWDK GTWNSIQNKK GKQRAYDSEE AAARTYDLAA LKYWGPDTTL 120 NFEIDTYKKD IEEMEKLSKD EYLASLRRRS SGFSRGVSKY RGVARHHHNG RWEARIGRVL 180 GNKYLYLGTY GTQEEAAAAY DLAAIEYRGA KAVTNFGISI YADRLKNVVP EVQSTPEATE 240 IVASPKNEQV EDVHHDIICP AQQEQQLEQE QETTLEEIED SLAEIHNLDF APSAEDENPW 300 SLCLDSNYNL LPVPHMPFDK SGELLDLFDD TGFEDNIDII FDGAFSYEYE LEKVDAFITS 360 PSSSSSTTTS LSCPVSHC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 6 | KRRRL |
2 | 2 | 33 | KRRRLSPTCSSSCSSSSSCINELQLPKAKKLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.1 | 1e-85 | AP2 family protein |