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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc008172.1_g010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | AP2 | ||||||||
Protein Properties | Length: 392aa MW: 43750.3 Da PI: 6.6824 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.2e-17 | 65 | 113 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Cse_sc008172.1_g010.1 65 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 113 56******.**********965...5************************998 PP | |||||||
2 | AP2 | 55.7 | 1.2e-17 | 123 | 171 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Cse_sc008172.1_g010.1 123 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 171 56******.**********965...5************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence |
MSTPKSSSKL KSLDSNSHID MGFPILQRNT SIPQPTERRG RKKEAEPGRF LERRGRKKEA 60 EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAQEA ALAYDRAALS MKGRKKEAEP 120 GRFLGVRRRP WGRYAAEIRD PTTKERHWLG TFDTAQEAAL AYDRAALSMK GTQARTNFIY 180 STDHDNTNFH SLISPLDVQS LFQPTQIFNA PPSHQATITK QPTNPTVLPK NPSPSSPNSC 240 YQPTIDDHHN FLINEGDNSG YLGSIVPDDY LNPRGNNGTS NVNISHDDDP IGQCSYWDQN 300 RQLYTSDEAE VYGVIWGGSE SSWETMNGYD LSAIVNYPTP SSMMDEEGHM VGLYDPNSSQ 360 ELMASSASSN LNNSSSATNC AYSDIVGIGY SL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 2e-41 | ERF family protein |