PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008172.1_g010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family AP2
Protein Properties Length: 392aa    MW: 43750.3 Da    PI: 6.6824
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008172.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.2e-1765113355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Cse_sc008172.1_g010.1  65 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 113
                            56******.**********965...5************************998 PP

2AP255.71.2e-17123171355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Cse_sc008172.1_g010.1 123 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 171
                            56******.**********965...5************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MSTPKSSSKL KSLDSNSHID MGFPILQRNT SIPQPTERRG RKKEAEPGRF LERRGRKKEA  60
EPGRFLGVRR RPWGRYAAEI RDPTTKERHW LGTFDTAQEA ALAYDRAALS MKGRKKEAEP  120
GRFLGVRRRP WGRYAAEIRD PTTKERHWLG TFDTAQEAAL AYDRAALSMK GTQARTNFIY  180
STDHDNTNFH SLISPLDVQS LFQPTQIFNA PPSHQATITK QPTNPTVLPK NPSPSSPNSC  240
YQPTIDDHHN FLINEGDNSG YLGSIVPDDY LNPRGNNGTS NVNISHDDDP IGQCSYWDQN  300
RQLYTSDEAE VYGVIWGGSE SSWETMNGYD LSAIVNYPTP SSMMDEEGHM VGLYDPNSSQ  360
ELMASSASSN LNNSSSATNC AYSDIVGIGY SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-41ERF family protein