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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc006236.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25428.1 Da PI: 8.361 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.1 | 2.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsst+klye+ss Cse_sc006236.1_g040.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTNKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 68.5 | 2.2e-23 | 78 | 171 | 8 | 99 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 + ++ ++ + +q e+a Lk++++nL + +R+l+Ge+L L +++Lq+Le+qLe+ l++iR K+e+l+++i+el +k + +++en + Cse_sc006236.1_g040.1 78 QlaNSMSDVKLWQMEAAILKQKLQNLHEAHRQLMGEELCGLGVEDLQKLENQLETNLQRIRLEKEEMLTNEIQELTRKGNLIHQENIE 165 34467788999***************************************************************************** PP K-box 94 Lrkkle 99 L kk+ Cse_sc006236.1_g040.1 166 LYKKIY 171 ***985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MGKGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TNKLYEFSST 60 SMKSAIQRYN RSKEENNQLA NSMSDVKLWQ MEAAILKQKL QNLHEAHRQL MGEELCGLGV 120 EDLQKLENQL ETNLQRIRLE KEEMLTNEIQ ELTRKGNLIH QENIELYKKI YEARAYAATC 180 DENSGFLACN SSVIQACSPT NLQLCQPELR GTLDMPLTAT RSW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-82 | MIKC_MADS family protein |