PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005454.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 484aa MW: 53815.2 Da PI: 7.7344

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005454.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.3e-17	152	201	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cse_sc005454.1_g020.1 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201 78*****************......55**********************998 PP
2	AP2	44.9	2.8e-14	244	294	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k++g Cse_sc005454.1_g020.1 244 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKYNG 294 89******.7**5553..2.26******99**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MWDLNGAPDL RPSNQQQESN NTCSDHTNSK GKRVGSISNS SSSMVVMEED DNIISDEDND 60 SCSRKRSNKL FGFTMDGEGD VPVTHQFFPV DEQEVGPTTS LGVGSGSGFP AAHWVGVQFS 120 GVGAGGYVEK GVGPEVAQPL KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG 180 GFDTAHAAAR AYDRAAIKFR GMEADINFTL QDYEDDLKQM SNLTKEEFVH VLRRQSTGFP 240 RGSSKYRGVT LHKCGRWEAR MGQFLGKKYV YLGLFDTEVE AARAYDKAAI KYNGKDAVTN 300 FDSTSYENES NVTECSSNNE NVNNASSDHN LDLSLGQNSA PNKQSHRELG FRPMALGVGR 360 YEGFNETETL QFLNHTHLQS VGSSEGNYGP RGYGHFTRPV NPNMYHMLRP PPLNSFIHQT 420 QFPSSTMVGR NDQLNRNNGS IHMYANSAAA SSGFPQQRFN MRQPAAPPHT QTWMHNNGYS 480 TTLS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MWDLNGAPDL RPSNQQQESN NTCSDHTNSK GKRVGSISNS SSSMVVMEED DNIISDEDND  60
SCSRKRSNKL FGFTMDGEGD VPVTHQFFPV DEQEVGPTTS LGVGSGSGFP AAHWVGVQFS  120
GVGAGGYVEK GVGPEVAQPL KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GMEADINFTL QDYEDDLKQM SNLTKEEFVH VLRRQSTGFP  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKYV YLGLFDTEVE AARAYDKAAI KYNGKDAVTN  300
FDSTSYENES NVTECSSNNE NVNNASSDHN LDLSLGQNSA PNKQSHRELG FRPMALGVGR  360
YEGFNETETL QFLNHTHLQS VGSSEGNYGP RGYGHFTRPV NPNMYHMLRP PPLNSFIHQT  420
QFPSSTMVGR NDQLNRNNGS IHMYANSAAA SSGFPQQRFN MRQPAAPPHT QTWMHNNGYS  480
TTLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-113	AP2 family protein