![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc005371.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 229aa MW: 26232.1 Da PI: 9.8149 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.4 | 4.3e-24 | 57 | 107 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie++ r+v+fskRrng++KKA+EL vLCd++v +fs t++lyeys+ Cse_sc005371.1_g030.1 57 KRIEDNGSRHVSFSKRRNGLMKKAHELAVLCDVDVGCFVFSGTNRLYEYST 107 79***********************************************96 PP | |||||||
2 | K-box | 31.4 | 7.8e-12 | 151 | 217 | 32 | 98 |
K-box 32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + qR+l ++++ + eL qLe+q++ +l+ +R++K+el+l ++ lq+k+++l++e++ L+++l Cse_sc005371.1_g030.1 151 EMVQRQLEDHKVKQSDATELWQLEKQIQPALQLVRTRKTELMLGAVNALQEKKNQLSKEKQVLEREL 217 46788898999999999*********************************************99876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence |
STRKERDAVY GYTQALLTWS KTGKVVTLLT LEQRKKLVTK AQAPNKVSMG RGKVELKRIE 60 DNGSRHVSFS KRRNGLMKKA HELAVLCDVD VGCFVFSGTN RLYEYSTGES SMIKILTRYQ 120 DYKKTDEIVR RTACELASEH RDVCTADELT EMVQRQLEDH KVKQSDATEL WQLEKQIQPA 180 LQLVRTRKTE LMLGAVNALQ EKKNQLSKEK QVLERELLAA RLNESNVDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65050.2 | 7e-41 | MIKC_MADS family protein |