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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc005228.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 164aa MW: 19171.2 Da PI: 10.242 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.3 | 2.3e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie++ r+v+fskRrng++KKA+EL vLCd++v +fs t++lyeys+ Cse_sc005228.1_g020.1 9 KRIEDNGSRHVSFSKRRNGLMKKAHELAVLCDVDVGCFVFSGTNRLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 30.3 | 1.7e-11 | 67 | 149 | 16 | 98 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +l e++++ e + qR+l ++++ + eL qLe+q++ l+ +R++K++l+l ++ lqkk+++l++e++ L+++l Cse_sc005228.1_g020.1 67 KLASEHRNVCTADELTEMVQRQLEDHKVQQSDTTELWQLEKQIQPVLQLVRTRKTQLMLGAVKALQKKKNQLSKEKQVLEREL 149 556666666666666668899999999****************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence |
MGRGKVELKR IEDNGSRHVS FSKRRNGLMK KAHELAVLCD VDVGCFVFSG TNRLYEYSTG 60 ERTVREKLAS EHRNVCTADE LTEMVQRQLE DHKVQQSDTT ELWQLEKQIQ PVLQLVRTRK 120 TQLMLGAVKA LQKKKNQLSK EKQVLERELR IIRPWFPTTV LFYV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65050.2 | 1e-37 | MIKC_MADS family protein |