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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc004019.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 25191.7 Da PI: 9.976 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.8 | 1.9e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g++KKA ELS+LCdaeva+++fs++gk y +ss Cse_sc004019.1_g020.1 9 KRIENPTSRQVTFSKRRDGLIKKAIELSILCDAEVALLVFSPSGKPYHFSS 59 79*********************************************9996 PP | |||||||
2 | K-box | 15.1 | 9.7e-07 | 83 | 110 | 11 | 38 |
K-box 11 eakaeslqqelakLkkeienLqreqRhl 38 +++e +++e++ +kk ie+L++++Rhl Cse_sc004019.1_g020.1 83 VRTTEVWKNEMDDMKKTIETLETKHRHL 110 456899*********************8 PP | |||||||
3 | K-box | 45.9 | 2.4e-16 | 123 | 175 | 35 | 87 |
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +Rhl Ged+++L +keL++Le+qL +++ ++RskK++ l e+ ++l kk k + Cse_sc004019.1_g020.1 123 LRHLSGEDISTLGMKELKRLERQLRTGVDRVRSKKHKSLQEENNNLHKKIKLH 175 6**********************************************998755 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MGRGKVEVKR IENPTSRQVT FSKRRDGLIK KAIELSILCD AEVALLVFSP SGKPYHFSSH 60 DMDRTIRRYK IEKGLDKVNN HGVRTTEVWK NEMDDMKKTI ETLETKHRHL ASLNNFQYFL 120 LVLRHLSGED ISTLGMKELK RLERQLRTGV DRVRSKKHKS LQEENNNLHK KIKLHELLSE 180 AEDSSGLDSS SDHVIQRFIP DGQPHSHIDM NELAFPSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.4 | 5e-43 | MIKC_MADS family protein |