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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc002997.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26334 Da PI: 9.6564 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.4 | 2.4e-30 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+ +i+fss+g++yey+ Cse_sc002997.1_g030.1 9 KRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEITLIVFSSRGRVYEYA 58 79***********************************************8 PP | |||||||
2 | K-box | 99.5 | 4.7e-33 | 81 | 172 | 8 | 99 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 s++e +a+ +qqe++kL+++i++Lq+++ hl+Ge+L+ L++keL+qLe++Le++++kiRskKn+++l+++e+lqk+e el+++n Lr Cse_sc002997.1_g030.1 81 STQEINAQFYQQESKKLRQQIQMLQNTNSHLMGENLGCLNVKELKQLETRLERGISKIRSKKNDMILAETENLQKREVELEHHNAFLR 168 3778899********************************************************************************* PP K-box 96 kkle 99 +k++ Cse_sc002997.1_g030.1 169 SKVQ 172 *986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MGRGKIEIKR IENNTNRQVT FCKRRNGLLK KAYELSVLCD AEITLIVFSS RGRVYEYANN 60 NIKSTIERYR KATSSTPSTW STQEINAQFY QQESKKLRQQ IQMLQNTNSH LMGENLGCLN 120 VKELKQLETR LERGISKIRS KKNDMILAET ENLQKREVEL EHHNAFLRSK VQIAESERVH 180 ELNMSSGHAY NALQAYLARN SLHLNIMEPM EDPSAYSIHE KPELHLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 3e-97 | MIKC_MADS family protein |