PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc001511.1_g040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 22962.6 Da    PI: 8.1836
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc001511.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.6e-25959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie+k+ rqvtfskRrng+lKKA+EL  LCd++va+ +fs +gkl+e+s+
  Cse_sc001511.1_g040.1  9 KRIEDKTSRQVTFSKRRNGLLKKAYELAELCDVDVALFVFSGRGKLFEFST 59
                           79***********************************************96 PP

2K-box181.2e-071061723399
                  K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              qRhl  ++++ L++  L qLeqqL++ l+++  +K+el +  ++ lq +e el++e k++  +++
  Cse_sc001511.1_g040.1 106 MIQRHLEENNIKMLDITGLDQLEQQLNSFLQQVQIRKMELKMGVLKALQDQEMELKKERKYMMDQIM 172
                            6689*********************************************************999987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MGRGKVELKR IEDKTSRQVT FSKRRNGLLK KAYELAELCD VDVALFVFSG RGKLFEFSTG  60
DSKLASMAEI LTRYQSCKKI EKLKRIQESL APQYRDVFTA DELTEMIQRH LEENNIKMLD  120
ITGLDQLEQQ LNSFLQQVQI RKMELKMGVL KALQDQEMEL KKERKYMMDQ IMAMDRINND  180
SDAAEPQPPV MGFQITW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166LKKERKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.29e-40MIKC_MADS family protein