![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cse_sc001511.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22962.6 Da PI: 8.1836 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80 | 1.6e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k+ rqvtfskRrng+lKKA+EL LCd++va+ +fs +gkl+e+s+ Cse_sc001511.1_g040.1 9 KRIEDKTSRQVTFSKRRNGLLKKAYELAELCDVDVALFVFSGRGKLFEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 18 | 1.2e-07 | 106 | 172 | 33 | 99 |
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 qRhl ++++ L++ L qLeqqL++ l+++ +K+el + ++ lq +e el++e k++ +++ Cse_sc001511.1_g040.1 106 MIQRHLEENNIKMLDITGLDQLEQQLNSFLQQVQIRKMELKMGVLKALQDQEMELKKERKYMMDQIM 172 6689*********************************************************999987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence |
MGRGKVELKR IEDKTSRQVT FSKRRNGLLK KAYELAELCD VDVALFVFSG RGKLFEFSTG 60 DSKLASMAEI LTRYQSCKKI EKLKRIQESL APQYRDVFTA DELTEMIQRH LEENNIKMLD 120 ITGLDQLEQQ LNSFLQQVQI RKMELKMGVL KALQDQEMEL KKERKYMMDQ IMAMDRINND 180 SDAAEPQPPV MGFQITW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 160 | 166 | LKKERKY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65050.2 | 9e-40 | MIKC_MADS family protein |