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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000102.1_g110.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25765.1 Da PI: 5.4679 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89 | 2.5e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+ yss Cse_sc000102.1_g110.2 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFHYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 50.2 | 1.1e-17 | 93 | 171 | 20 | 98 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++a L ke+++ ++R+l Ge+L++L ++eL+qLe+ Le +l ++ +kK e+++++i++lq+k +l een++Lr+++ Cse_sc000102.1_g110.2 93 NYAILSKEVSERTLQLRRLRGEELHNLGIEELHQLEKSLEAGLGRVVTKKGEVIMSEINRLQEKGVQLMEENNRLRQEM 171 5677888888888889************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MARDKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFHYSSS 60 SMKEILEQRS LHSKNLEKLD QPSLELQLVE DANYAILSKE VSERTLQLRR LRGEELHNLG 120 IEELHQLEKS LEAGLGRVVT KKGEVIMSEI NRLQEKGVQL MEENNRLRQE MLEISNARKQ 180 IHTDTENVIG EESESSESVD DICNSAGPSQ DYENSYTSLK LGLPYTG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-93 | MIKC_MADS family protein |