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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc000027.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | AP2 | ||||||||
Protein Properties | Length: 584aa MW: 65020.5 Da PI: 6.4708 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22.9 | 2.1e-07 | 173 | 213 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkf 36 s y+GV++++++gr++A+++d + g ++ ++++lg f Cse_sc000027.1_g030.1 173 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGEF 213 57*******************665564477446******98 PP | |||||||
2 | AP2 | 47 | 6.5e-15 | 307 | 356 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Cse_sc000027.1_g030.1 307 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 356 9***************988532...5************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence |
MNSNNWLSFP LSPTHSSLPP HLHTAQSHNF NLGVVHDNMD TPFPNQEWNM IGSQSSNDQV 60 PKVADFLGVS KSENSSDLVA YNDIQGNDTD YLFTNNNLLP QVQNTLSATP TSYELPENAS 120 TLQSLTLSMG SGKRSTCETS TPENSSTDNT NSTTSIVEAN PRRTLDTFGQ RTSIYRGVTR 180 HRWTGRYEAH LWDNSCRREG QSRKGRQVYL GEFFYIYCSV LISFHQSFDY VVKAWFICGL 240 GGYDKEEKAA RAYDMAALKY WGTSTTTNFP ITNYEKELED MKNMTRQEFV ASIRRKSSGF 300 SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA AIKFRGLSAV 360 TNFDMNRYDV KSILESNTLP IGGGAAKRLK EAQAIESSRK REEMLALGSG FPFGNTATAG 420 SVLQAYPLLQ QSFETQSAQP LLTLQNPEIS HYSTQDPHFH QNYLQAHHHH PYNMHSSQHS 480 STQTPQFYNS YLQNNPVLLH GLMNMGGSSS SVMDGTNNNG GTSSGSYSGG GYMGNFLGQS 540 GSTPEELSMV KVDYDNLPTE NYAGWSGDSS VQESSPSVFT MWND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |