PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62039676-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

MIKC_MADS

Protein Properties

Length: 226aa MW: 25922.7 Da PI: 9.2323

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62039676-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.8	9.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gkl+e++s AUR62039676-RA 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLFEFCS 59 79***********************************************96 PP
2	K-box	70	7.7e-24	60	123	34	97
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + R+llGedL +L +keL+qLe+qLe slk+iRs+K++ l++q+ el+++e++l e+n++L kk AUR62039676-RA 60 SSRNLLGEDLAPLAIKELEQLEHQLELSLKQIRSTKTQQLMDQMAELRRREQALIENNRNLMKK 123 67***********************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLFEFCSS 60 SRNLLGEDLA PLAIKELEQL EHQLELSLKQ IRSTKTQQLM DQMAELRRRE QALIENNRNL 120 MKKSFSIASK LVLSRFDVAF SIKLEHCSPQ IPQRLAWEGD NTQDQQHIPF SRIPHPSEGF 180 FQPLYCNPPP QIGYNNLEST EMSVATPSQQ HVNGYNVHGH HGWML*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	5e-57	MIKC_MADS family protein