PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62039645-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 1340aa MW: 150907 Da PI: 7.9486 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.6 | 3.3e-06 | 59 | 82 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lCr+ +r G C +G+ C+F H++ AUR62039645-RA 59 MPLCRDNLR-GNCTRGAFCRFLHSE 82 589999999.*************95 PP | |||||||
2 | zf-CCCH | 18.8 | 2.8e-06 | 211 | 233 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f+r G C +G++Ck+ H+ AUR62039645-RA 211 RSPCQHFLR-GKCDFGASCKRWHP 233 689******.**********9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1340 aa Download sequence |
MEQTVSERPL YQEQHISQLH TQPNGTVSSN GAHLERDPEE RWCPRRISGD QLRHDKVQMP 60 LCRDNLRGNC TRGAFCRFLH SESDEHDRSR FCQNEPEKLG DVSTVGNSQL YRTNEEAGST 120 AKFSSRGRRS PCRRFQSGRC YRGVSCPYLH PEMPSFHNSR VEQQQVDRAV RDPGFDGRNR 180 DNFGRISLEH VEANKENNST IMSFSRECRS RSPCQHFLRG KCDFGASCKR WHPVNTYASS 240 RHDLNTQHQG ITETFNYPGS GERSRDVTLR TSQEHDRENM HNLLRTGAFS RESREKSPCR 300 NYLRGRCYRG SSCLHLHPVT VYDRPRSDSW SAEQRQVVSG TSRSPHFVDG SIATNFRISQ 360 SHDHNNYVNQ PCRDTHAFCE QNKAWLTKDG VQLAGSREEM DVNARSSSYE RQRNRLAGNF 420 GCDKPIREVC LQFTKGRCTR GELCRYLHGF HEYATSTYNW NEKPNAEAAR DSGYFGVANQ 480 YANTTTAQDP AGFKNYQSSL GESSLKASDG WFDMRRVDGL SCEVSGEKNR SFCNSAKGHE 540 NVSLWSRPFK RQRSRSRSPI NLQDDFHSRK FSRCDSRIDL YGGRSRNVAQ FQYPDRRSYR 600 YEKPVYHVNG QQRTCEETSV NPRSCEHYDS KLITPQMHEK VVTQGLQLEQ HANGGVGSNT 660 VIVGMKNEAD TVKCALQPSH TNQNEEILAA DSVAVDSSEG AAATPASSQD ALELGSTYSG 720 GKHLISPSAS DRTILVHEAN AEAPIDSGQE GKDETVELTP SIKTYCRKKS KKRQPISCEE 780 PTREEVIDAS KQGVEFCSVV DTSLSKPNIV NVSSIPVDME MSATRNNGLE NVLMHDHPVK 840 KKFRIRRKKK GPDASCEETR KGEVCNDLKL DTPVCSLEKT SLSNPDIVSV SDIPADVKMS 900 ASNNNDLQNV LMDEDPGIQI SSLLDTSLSD ANTLSLSGVP VEMETSASKN NDLEDVLMRD 960 QPVQKKVKKK RKKKRPAASC EETMEVEVTD VSKLGTPICS VVETSISNPN IVSVSEPLEG 1020 DVADSSTQVM PISSLVETSL SIPNIMSGSG VPVDKISASK NNHLENVPMC DNPVKQQALP 1080 LSLKGVVPNS RRKLLVLDVN GILVDIVVGY SHRYKPDTRV ATKAVFKRPF CDEFLQFCFD 1140 RFDVGIWSSR TRQNLKKVVD FLLEDSKDRL RFCWDQSHCT ATEYKTLENR EKPLVLKELK 1200 YLWWDTKGSR LPWDAGYYNE TNTVLLDDSP YKALRNPVTS DTVLILFTFF GTSVVQPNTA 1260 IFPRPYSYKN AGDHSLGPGG DLRNYLERLA EAENVQKFIQ ENPFGQRPIS IASRSWNFYS 1320 KIVGNYGRQE EYSNIAPVS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 550 | 555 | KRQRSR |
2 | 964 | 972 | QKKVKKKRK |
3 | 965 | 973 | KKVKKKRKK |
4 | 968 | 974 | KKKRKKK |
5 | 969 | 975 | KKKRKKK |
6 | 969 | 973 | KKRKK |