PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62038620-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 479aa MW: 52989.6 Da PI: 5.6281

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62038620-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.2e-14	300	347	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ AUR62038620-RA 300 ASHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYVKQLR 347 58999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MDGVVELGYT ERHSTSNPTA SSNHSHFQSP LALATYTTVD PIPIPSDGAN SNDENDETEG 60 EADSDPEAQT ILGLPVKLEL RYQKGITVVP DSSDEPIELM QIEIPEDIQL SSPDVVSNNL 120 DSNFPLVAVG PTPPTPSHQH HTVDSFITTK STRRWPVMQQ QQLQDPIIIS NNFQTPSLGI 180 APMENLSQED AYYSQTVSII LKLQSSRWAE PSSTTSVATS SYLSYSSNSA FSSWIPGSNH 240 HHSPVEGTSQ CLLKNILFTV PLLHSKYREE NVSSPKSDLH YMALGRGKST IGPPHDELSA 300 SHVLAERRRR EKLNERFVIL RSLVPFVTKM DKASILGDTI EYVKQLRKKV QELEGRTKSG 360 EERDKRKLQV IEESSSGNEM RVKKTAAQSQ QSNMLEVSII ESDALVELQC PYKEGLLLDV 420 MIKLRDMRLE VTTVLSSLNN GLLAAELRAK VKENANGKKP SIIEVKRAVN QKIPQSDS*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MDGVVELGYT ERHSTSNPTA SSNHSHFQSP LALATYTTVD PIPIPSDGAN SNDENDETEG  60
EADSDPEAQT ILGLPVKLEL RYQKGITVVP DSSDEPIELM QIEIPEDIQL SSPDVVSNNL  120
DSNFPLVAVG PTPPTPSHQH HTVDSFITTK STRRWPVMQQ QQLQDPIIIS NNFQTPSLGI  180
APMENLSQED AYYSQTVSII LKLQSSRWAE PSSTTSVATS SYLSYSSNSA FSSWIPGSNH  240
HHSPVEGTSQ CLLKNILFTV PLLHSKYREE NVSSPKSDLH YMALGRGKST IGPPHDELSA  300
SHVLAERRRR EKLNERFVIL RSLVPFVTKM DKASILGDTI EYVKQLRKKV QELEGRTKSG  360
EERDKRKLQV IEESSSGNEM RVKKTAAQSQ QSNMLEVSII ESDALVELQC PYKEGLLLDV  420
MIKLRDMRLE VTTVLSSLNN GLLAAELRAK VKENANGKKP SIIEVKRAVN QKIPQSDS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	311	ERRRRE
2	307	312	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	3e-50	bHLH family protein