PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62037872-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 394aa MW: 42577 Da PI: 7.9684

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62037872-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.3	9.2e-37	22	121	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++++ s+++++ ss+ ++ss+g AUR62037872-RA 22 ATGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDELDQLPAWSPTNMNVLSSNRRRGKSSAGdgvvela 116 589**************************************************************888886664444444444444445555665 PP TCP 89 ....k 89 + AUR62037872-RA 117 eekdA 121 55431 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
SALRKAGIGE IVEVQGGHIV RATGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLINKAKTAI DELDQLPAWS PTNMNVLSSN RRRGKSSAGD GVVELAEEKD 120 AGSAEGMYGG EEQQQLYNNA NCSNSSLLPP SLDSDAIADT IKSFFPMGGA MQGTHKRVRH 180 QRLRCSFRII LMVDPILMHP HSHHHSAAAA HAHDEQQHTL FPGAVPIGFE NSNTGWADSQ 240 HQSNPELGRL HRLMLGWNTQ HTGTEHHNLG TSSGSGSGSG GGGFIFNQPP PLLHPLFGGG 300 QHSQFYTQRG PLQSSNTPSI RAWISDPSFS IASSSEHHNQ HHQAIAVHPQ ALSGLGFTSG 360 GFPGFHIPAR IQGEEEHDGD PNRPSSASSG SRH*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

SALRKAGIGE IVEVQGGHIV RATGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL  60
GYDRPSKAVD WLINKAKTAI DELDQLPAWS PTNMNVLSSN RRRGKSSAGD GVVELAEEKD  120
AGSAEGMYGG EEQQQLYNNA NCSNSSLLPP SLDSDAIADT IKSFFPMGGA MQGTHKRVRH  180
QRLRCSFRII LMVDPILMHP HSHHHSAAAA HAHDEQQHTL FPGAVPIGFE NSNTGWADSQ  240
HQSNPELGRL HRLMLGWNTQ HTGTEHHNLG TSSGSGSGSG GGGFIFNQPP PLLHPLFGGG  300
QHSQFYTQRG PLQSSNTPSI RAWISDPSFS IASSSEHHNQ HHQAIAVHPQ ALSGLGFTSG  360
GFPGFHIPAR IQGEEEHDGD PNRPSSASSG SRH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	2e-73	TCP family protein