PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62035279-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

RAV

Protein Properties

Length: 410aa MW: 45136.2 Da PI: 9.2987

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62035279-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.1	1e-13	74	122	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g AUR62035279-RA 74 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 122 89**9888.8*****3.....5******99***********98 PP
2	B3	94.4	7.6e-30	208	312	1	93
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk++ae+h + ++ +++ l +ed + ++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F AUR62035279-RA 208 FEKVVTPSDVGKLNRLVIPKQHAEKHfplqgssggsgtcS-SSSKGVLLNFEDVNEKVWRFRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDIVSF 301 99*************************99988877752.334899********************************************** PP EE-SSSEE..E CS B3 83 kldgrsefelv 93 +++ +++l+ AUR62035279-RA 302 QRSTGPDKQLY 312 *7755666555 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MDGSSMDESS ATSESLISTT PQPTIMVRNV IKPAPLPCKA SAMAGSLCRM GSGTSVVIDS 60 ENGIEAESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAQRF 120 RGRDAVTNFK PLSTEDELGA GELRFLNSRS KAEVVDMLRK HTYIDELQQS RRNFKVDVEK 180 VGVGSILSGD KAKAIDGSSG GFGREQLFEK VVTPSDVGKL NRLVIPKQHA EKHFPLQGSS 240 GGSGTCSSSS KGVLLNFEDV NEKVWRFRYS YWNSSQSYVL TKGWSRFVKE KCLKAGDIVS 300 FQRSTGPDKQ LYIDYKQRNV RNGPEPESIE ALDRDNRVVV QCPVVEVRST GPMLRLFGVD 360 ICKSPIVISE NVVAEAAAGN RCGNRKRLRE VELLTMESSN KKQMVVAAL*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MDGSSMDESS ATSESLISTT PQPTIMVRNV IKPAPLPCKA SAMAGSLCRM GSGTSVVIDS  60
ENGIEAESRK LPSSKYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEEDEAA RAYDVAAQRF  120
RGRDAVTNFK PLSTEDELGA GELRFLNSRS KAEVVDMLRK HTYIDELQQS RRNFKVDVEK  180
VGVGSILSGD KAKAIDGSSG GFGREQLFEK VVTPSDVGKL NRLVIPKQHA EKHFPLQGSS  240
GGSGTCSSSS KGVLLNFEDV NEKVWRFRYS YWNSSQSYVL TKGWSRFVKE KCLKAGDIVS  300
FQRSTGPDKQ LYIDYKQRNV RNGPEPESIE ALDRDNRVVV QCPVVEVRST GPMLRLFGVD  360
ICKSPIVISE NVVAEAAAGN RCGNRKRLRE VELLTMESSN KKQMVVAAL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-136	RAV family protein