PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AUR62032870-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 194aa MW: 21450.7 Da PI: 9.4674 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.6e-09 | 27 | 73 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + f L ++P + kK +K ++L +A++++k+Lq AUR62032870-RA 27 DHIIAERKRRELLSQLFISLSAIVPGL-----KKIDKTSVLGEAIKHMKELQ 73 699************************.....9******************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 194 aa Download sequence |
MSQPSKTKQA VSSGGAKRKR QPSQVQDHII AERKRRELLS QLFISLSAIV PGLKKIDKTS 60 VLGEAIKHMK ELQEKVKVLE SVIAKRTMES VVLVKKSKLM VDEGSSDNNV SSSTTVDDYC 120 RSSNNDDGDS SSDSLPEVEV KILGNSLLLR VYCGQQKDIL VKLFAEIDKH HLSITNFSVI 180 PFENLAQDIT IVAK |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 17 | 36 | KRKRQPSQVQDHIIAERKRR |
2 | 17 | 58 | KRKRQPSQVQDHIIAERKRRELLSQLFISLSAIVPGLKKIDK |
3 | 18 | 37 | KRKRQPSQVQDHIIAERKRR |
4 | 32 | 37 | ERKRRE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-36 | bHLH family protein |