PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62030928-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 309aa    MW: 35558.9 Da    PI: 8.6609
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62030928-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.56.4e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri+n + rqvtfskRr g+lKKA ELSvLCdaev  iifsstgkly+++s
  AUR62030928-RA  9 KRIDNATSRQVTFSKRRSGLLKKARELSVLCDAEVGAIIFSSTGKLYDFAS 59
                    79***********************************************86 PP
2K-box80.54.1e-2780171798
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      s ++++ + +q+e+a+L+++++ Lq+++R+l+G++L+ Ls+k++q+Le+qLe+slk++R kK++ll e+i+el ++   ++++n +L k+l
  AUR62030928-RA  80 LSSAASELKFWQREAANLRQQLQYLQESHRKLMGQELSGLSIKDMQNLETQLETSLKSVRMKKDQLLSEEIRELNQRGAIIHQDNIELYKQL 171
                     33678899********************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGRGKIVIKR IDNATSRQVT FSKRRSGLLK KARELSVLCD AEVGAIIFSS TGKLYDFAST  60
NMKMVIERYN KMKEENNHQL SSAASELKFW QREAANLRQQ LQYLQESHRK LMGQELSGLS  120
IKDMQNLETQ LETSLKSVRM KKDQLLSEEI RELNQRGAII HQDNIELYKQ LNLVKQQNSE  180
LQKQLATTLT KLVLCPVPHQ MLSQALKQTI LLEWEDACAH RERSIQQQLQ IWYDLVHSGR  240
FDKQEKILLW NCVVSNNLMC MSCTILGSLK GEPKNSLHQE EPFCFTYGLT TWLSLEHHTE  300
SAENPIVP*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-81MIKC_MADS family protein