PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AUR62027088-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28410.3 Da PI: 9.7301 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85 | 4.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n + rqvtfskRr g+lKKA ELSvLCdaev iifsstgkly+++s AUR62027088-RA 9 KRIDNATSRQVTFSKRRSGLLKKARELSVLCDAEVGAIIFSSTGKLYDFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 69.8 | 8.8e-24 | 91 | 183 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + s ++++ + +q+e+a+L+++++ Lq+++R+l+G++L+ Ls+k++q+Le+qLe+slk++R kK +++++ el k+ + ++++n +L+k++ AUR62027088-RA 91 QLSSAASELKFWQREAANLRQQLQYLQESHRKLMGQELSGLSIKDMQNLETQLETSLKSVRMKKGAIIHQHNIELYKQLNLVKQQNSELQKQV 183 233678899*********************************************************************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence |
MGRGKIVIKR IDNATSRQVT FSKRRSGLLK KARELSVLCD AEVGAIIFSS TGKLYDFAST 60 KNSDIDILNA TFSMKMVIER YNKMKEENNH QLSSAASELK FWQREAANLR QQLQYLQESH 120 RKLMGQELSG LSIKDMQNLE TQLETSLKSV RMKKGAIIHQ HNIELYKQLN LVKQQNSELQ 180 KQVCTTEETN QIQQHPHMSY NVNNDSHMNT AINLQLSQPE QHNDETSAKN MKLCVTPNAK 240 PSITTDNST* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57230.1 | 2e-78 | MIKC_MADS family protein |