PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026381-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 202aa MW: 22741.3 Da PI: 5.1581

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026381-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.1e-09	121	167	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+ + + + L ++P + kK++K ++L A++++k+Lq AUR62026381-RA 121 DHIIAERKRRELLSHMIISLSAMIPGL-----KKVDKTTVLGSAIKHMKELQ 167 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MDMEMEPNNP SLINDPYQQS EPTFEEQLAA TLGIDFPYPI DITNDTPSLE GDFDSINQYL 60 STPHISENND FSNNINNGND KDDIVRSDVQ KSQPSKNKKE TKKQAVSVGS KRKRQPSQVQ 120 DHIIAERKRR ELLSHMIISL SAMIPGLKKV DKTTVLGSAI KHMKELQEKV KNTGKAPKQS 180 DYPEMNTENV FDSSYDKAEK D*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	130	KRKRQPSQVQDHIIAERKRR
2	111	152	KRKRQPSQVQDHIIAERKRRELLSHMIISLSAMIPGLKKVDK
3	112	131	KRKRQPSQVQDHIIAERKRR
4	126	131	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	9e-20	bHLH family protein