PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62026299-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 465aa MW: 50557.4 Da PI: 6.1115

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62026299-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00042	216	233	7	24
HHHHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLr 24 ++ErrRR+++N+++ Lr AUR62026299-RA 216 MAERRRRKKLNDRLYLLR 233 79***********98887 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MLSRSNDVAW VDDTADQNDA VSWXXXXXXX XXXXXXXDGG DWYLAAGHII TPPSEIGNDA 60 LLLPSTLQTT SSCSSQPQFD PLLSSSSSQQ QLPFFPFSAA KSSLSSFYNN SPFESNAYNF 120 CTEPGFLPPV HRTEPGSCFE FPGFGYSGLD GLDSNPTLFG NRVKMLMPLE VGPSTGPGPV 180 EPSLFQKRFM VRLVTGGGGS GKGKGKRKGL PAKNLMAERR RRKKLNDRLY LLRPVHLRIV 240 VDWSGAYLVV LLDGWGGISN GKGGTLEGLW RLGSAKLHWI NLLPCSLALP GLSGVLCQQM 300 ILLVLDWMDR ASILGDAIDY LKELLERISE LHNELESSNP GPLMPASSHP STLIPPTLPC 360 RVKEEISPNS LPVPKNQLAR IEVSAGEGRA VNIHLFCARR PGLLLSTLEA LENLGLDIQQ 420 GVISCFNGFA LDIFRAEQCR EGNEILPEQI KAVLLDSAGF HGVM*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MLSRSNDVAW VDDTADQNDA VSWXXXXXXX XXXXXXXDGG DWYLAAGHII TPPSEIGNDA  60
LLLPSTLQTT SSCSSQPQFD PLLSSSSSQQ QLPFFPFSAA KSSLSSFYNN SPFESNAYNF  120
CTEPGFLPPV HRTEPGSCFE FPGFGYSGLD GLDSNPTLFG NRVKMLMPLE VGPSTGPGPV  180
EPSLFQKRFM VRLVTGGGGS GKGKGKRKGL PAKNLMAERR RRKKLNDRLY LLRPVHLRIV  240
VDWSGAYLVV LLDGWGGISN GKGGTLEGLW RLGSAKLHWI NLLPCSLALP GLSGVLCQQM  300
ILLVLDWMDR ASILGDAIDY LKELLERISE LHNELESSNP GPLMPASSHP STLIPPTLPC  360
RVKEEISPNS LPVPKNQLAR IEVSAGEGRA VNIHLFCARR PGLLLSTLEA LENLGLDIQQ  420
GVISCFNGFA LDIFRAEQCR EGNEILPEQI KAVLLDSAGF HGVM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	224	KRKGLPAKNLMAERRRRKK
2	218	225	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	2e-64	bHLH family protein