PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62024473-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family MIKC_MADS
Protein Properties Length: 346aa    MW: 39111.3 Da    PI: 5.159
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62024473-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.32.3e-241058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +ie++ +rqvtfskRr+g++KKA E+S+LC  eva++ifs+t+k+yey 
  AUR62024473-RA 10 FIEDNGKRQVTFSKRRKGLIKKATEISILCKCEVALMIFSNTNKMYEYR 58
                    8***********************************************6 PP
2K-box46.81.3e-169818018100
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + ++a L++ + +L+r+  ++lG +L+++++ +L++Le +L +  +++R++K+++++++++ + +  +e+++en++Lrk++ee
  AUR62024473-RA  98 DVDVATLREALIELRRSYNQMLGIGLQDMKYYDLHNLEMKLIDVFRNVRARKEQIFMAELSVSNEHVREMEKENEELRKEVEE 180
                     568999**************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    
MGRGKVPIQF IEDNGKRQVT FSKRRKGLIK KATEISILCK CEVALMIFSN TNKMYEYRSC  60
DRTMDSFATM HRNTIAAASS SKSASNVAPI ILPEDDLDVD VATLREALIE LRRSYNQMLG  120
IGLQDMKYYD LHNLEMKLID VFRNVRARKE QIFMAELSVS NEHVREMEKE NEELRKEVEE  180
LQQCLMSKSS GSGSESSSLK RLRADETGEG YITEKKRADA SVMTDDGYIT GRKRVDAGVM  240
TGDGYITKRK RADAGVMTDE GYFTERKRAD DGVMTGEGYF TERKRIDACV MTDDGYITGR  300
KRVDVGVMTD DGYITDWKRA DAGVMMDEGY ITEKEFESDD ILNLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232251RKRVDAGVMTGDGYITKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-29MIKC_MADS family protein