PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62022892-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 542aa MW: 58403.3 Da PI: 7.7872

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62022892-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	193	213	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f + G Ck G+ C FaHg AUR62022892-RA 193 PCPEFKK-GSCKKGEECEFAHG 213 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MGMDISQEQV CNNTSTLLEY AASDDINSFK LAVESGGLPI DEVGVWYTRG IGTNKMSYEE 60 RTPLMVAAQY GSNNILDFVL QFGGDSVHVN RVSGSDRVTA LHCAVAGGSH NSPYVVHRLI 120 SASANTNIVD ANVSELPDIN NGVYGSDDFR MYCFKIKPCS RAYTHDWTEC PFAHPGENAR 180 RRDPKKYQYT CVPCPEFKKG SCKKGEECEF AHGVFESWLH PAQYRTRLCK DEIGCARKVC 240 FFAHKREELR PVYASTGSAI PDVNVSSSPG GGFSCTSTPP MSPSFAPLSP SNGASGGAGG 300 MYQGKSGFGV TPPNLQLPGS RLRSSFSARD VEPSPRWNNN NMGRANDMMQ ATNLESAFAS 360 INVARKMSPP SVLDSPLNSP RKLSPPRALD SPKSMAAAML NSRAAAFVKR SQSFIDRTAP 420 GSPMGGNMSN PMSTPMSNWG SPNGTLDWGI HGEELNKLRK SNSFGFRGAN NNNANATRTS 480 PPGFNEPDVS WVNSLVKDEA GAGFLGARSP SYGRSGAGNG AQGQDMCLPW EQMYIEEQLV 540 N*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MGMDISQEQV CNNTSTLLEY AASDDINSFK LAVESGGLPI DEVGVWYTRG IGTNKMSYEE  60
RTPLMVAAQY GSNNILDFVL QFGGDSVHVN RVSGSDRVTA LHCAVAGGSH NSPYVVHRLI  120
SASANTNIVD ANVSELPDIN NGVYGSDDFR MYCFKIKPCS RAYTHDWTEC PFAHPGENAR  180
RRDPKKYQYT CVPCPEFKKG SCKKGEECEF AHGVFESWLH PAQYRTRLCK DEIGCARKVC  240
FFAHKREELR PVYASTGSAI PDVNVSSSPG GGFSCTSTPP MSPSFAPLSP SNGASGGAGG  300
MYQGKSGFGV TPPNLQLPGS RLRSSFSARD VEPSPRWNNN NMGRANDMMQ ATNLESAFAS  360
INVARKMSPP SVLDSPLNSP RKLSPPRALD SPKSMAAAML NSRAAAFVKR SQSFIDRTAP  420
GSPMGGNMSN PMSTPMSNWG SPNGTLDWGI HGEELNKLRK SNSFGFRGAN NNNANATRTS  480
PPGFNEPDVS WVNSLVKDEA GAGFLGARSP SYGRSGAGNG AQGQDMCLPW EQMYIEEQLV  540
N*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	1e-127	C3H family protein