PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62020815-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 469aa MW: 51911.7 Da PI: 5.886

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62020815-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.7e-13	232	283	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P++ + ++ + a+i A+e++++L+ AUR62020815-RA 232 QRMTHIAVERNRRKQMNEHLRVLRSLMPSS---YVQRGDQASIIGGAIEFVRELE 283 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
AATEAGGRFS ANVDDSSATN NNSLLPYHQP HGSGSVMPNI NMDRTLSFAD VMQFADFGPK 60 LALNHPRQHH DIQENSNADQ EDDHTITGID PVYFLKFPVL SNSHMVPGHN NTSSIHDDSN 120 TPTNNSINDR DGGFGDPLQD FRDREYGEXX XXXXXXXLST STNNLSNPVQ LEFLGNATND 180 DNNLMGLSTG ERIGAEGGAA AGTMGHNNKX XXXXXXRKRP RSIKTNEEVE SQRMTHIAVE 240 RNRRKQMNEH LRVLRSLMPS SYVQRGDQAS IIGGAIEFVR ELEQLLQCLE SQKRRRLYGD 300 QPRAMGDSST SSSSTALGLV QQTPQVQPPL AFPPPMGTQY HHQDDDQLRL LDHQLDPMAT 360 PTPTPAGLLR EETAESKSCF ADVEVKVLGF DALIKILSRR RHGQLIKAIA ALEDLHFTIL 420 HTNITTIEQT VLYSFNVKVA NEARFTAEDI AASVQQIFTF IHANTNII*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

AATEAGGRFS ANVDDSSATN NNSLLPYHQP HGSGSVMPNI NMDRTLSFAD VMQFADFGPK  60
LALNHPRQHH DIQENSNADQ EDDHTITGID PVYFLKFPVL SNSHMVPGHN NTSSIHDDSN  120
TPTNNSINDR DGGFGDPLQD FRDREYGEXX XXXXXXXLST STNNLSNPVQ LEFLGNATND  180
DNNLMGLSTG ERIGAEGGAA AGTMGHNNKX XXXXXXRKRP RSIKTNEEVE SQRMTHIAVE  240
RNRRKQMNEH LRVLRSLMPS SYVQRGDQAS IIGGAIEFVR ELEQLLQCLE SQKRRRLYGD  300
QPRAMGDSST SSSSTALGLV QQTPQVQPPL AFPPPMGTQY HHQDDDQLRL LDHQLDPMAT  360
PTPTPAGLLR EETAESKSCF ADVEVKVLGF DALIKILSRR RHGQLIKAIA ALEDLHFTIL  420
HTNITTIEQT VLYSFNVKVA NEARFTAEDI AASVQQIFTF IHANTNII*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	244	RMTHIAVERNRR
2	293	297	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	4e-52	bHLH family protein