PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019923-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

bHLH

Protein Properties

Length: 395aa MW: 44234.4 Da PI: 7.5943

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019923-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35	2.6e-11	218	260	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 e+Er+RR+r+N++f +Lr ++P+ K++ a+ L Av YI++L AUR62019923-RA 218 EAERKRRERLNQRFCTLRAVVPNV-----SKMDRASLLSDAVVYINKL 260 79*******************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MEDAISPFQS LSLNLQPKIS STSHQHCLQI IVKSKPGWLY AIYWQLSSIS NDSAYNNRRV 60 LACSDGYLMH SSKPGNLQQQ EVSHIQEVDE MVMSERFYTA SLHKFLDIED TNSVIGRLMS 120 SGTHLWLVDV DGKLNYSRCE RAREARLNNI QTLVFLPISP NGVIEVGSLD VIKEDRSLID 180 LTYSMFGARG DGNMNITSRN SKRRTAPATA VPQSSPVEAE RKRRERLNQR FCTLRAVVPN 240 VSKMDRASLL SDAVVYINKL KSRDQNLHQS ERQNNPAVDF LLCDQHLQQP DDQNPTVTVP 300 QLAAMMNTNV QVQVEVKLLG AEMIVHAQSS GLDYPTAKLM NVLRDLNLVI SNATISNMDE 360 FVLQNVVVKR QPEGNGFIGT KEGLTNAILQ RLQI*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MEDAISPFQS LSLNLQPKIS STSHQHCLQI IVKSKPGWLY AIYWQLSSIS NDSAYNNRRV  60
LACSDGYLMH SSKPGNLQQQ EVSHIQEVDE MVMSERFYTA SLHKFLDIED TNSVIGRLMS  120
SGTHLWLVDV DGKLNYSRCE RAREARLNNI QTLVFLPISP NGVIEVGSLD VIKEDRSLID  180
LTYSMFGARG DGNMNITSRN SKRRTAPATA VPQSSPVEAE RKRRERLNQR FCTLRAVVPN  240
VSKMDRASLL SDAVVYINKL KSRDQNLHQS ERQNNPAVDF LLCDQHLQQP DDQNPTVTVP  300
QLAAMMNTNV QVQVEVKLLG AEMIVHAQSS GLDYPTAKLM NVLRDLNLVI SNATISNMDE  360
FVLQNVVVKR QPEGNGFIGT KEGLTNAILQ RLQI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	224	KRRTAPATAVPQSSPVEAERKRR
2	220	225	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	3e-42	bHLH family protein