PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62019560-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

TCP

Protein Properties

Length: 366aa MW: 38903.6 Da PI: 6.9425

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62019560-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.8	1.3e-36	22	128	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++++ s+++++ ss+ ++ s+g AUR62019560-RA 22 ATGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKTAIDELDQLPAWSPTNMNVLSSNRRRGKGSAGdgvvela 116 589**************************************************************777775553333333333222224455555 PP TCP 89 ...........k 89 AUR62019560-RA 117 eekdagsaegmY 128 544333222220 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
SALRRAGIGE IVEVQGGHIV RATGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLINKAKTAI DELDQLPAWS PTNMNVLSSN RRRGKGSAGD GVVELAEEKD 120 AGSAEGMYGG EEQQQLYNNA NCSNSSLLPP SLDSDAIADT IKSFFPMGGG NAGHPQTSSA 180 SAAAAAHDEQ QHTLFPGAVP IGFENPNTGW ADSQHQSNPE LGRLHRLMLG WNTQHTGTEQ 240 HNLGTSSGSG SGGGGFIFNQ PPPLLHPLFG GGQHSQFYTQ RGPLQSSNTP SIRAWISDPS 300 FSIASSSEHH NQHHQAIAVP PQALSGLGFT SGGFPGFHIP ARIQGEEEHD GDPNRPSSAS 360 SGSRH*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

SALRRAGIGE IVEVQGGHIV RATGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL  60
GYDRPSKAVD WLINKAKTAI DELDQLPAWS PTNMNVLSSN RRRGKGSAGD GVVELAEEKD  120
AGSAEGMYGG EEQQQLYNNA NCSNSSLLPP SLDSDAIADT IKSFFPMGGG NAGHPQTSSA  180
SAAAAAHDEQ QHTLFPGAVP IGFENPNTGW ADSQHQSNPE LGRLHRLMLG WNTQHTGTEQ  240
HNLGTSSGSG SGGGGFIFNQ PPPLLHPLFG GGQHSQFYTQ RGPLQSSNTP SIRAWISDPS  300
FSIASSSEHH NQHHQAIAVP PQALSGLGFT SGGFPGFHIP ARIQGEEEHD GDPNRPSSAS  360
SGSRH*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	4e-70	TCP family protein